Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004603`

染色体: Chr07 坐标: 58840505-58844564 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004603`
名称	SmilChr07G004603
描述	ankyrin repeat-containing protein At5g02620-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	58840505 - 58844564 / `+`

ID 对照

NCBI Gene ID	`LOC130995176`
GeneID	`130995176`
locus_tag	`-`
NCBI Name	`LOC130995176`
原始查询	`SmilChr07G004603`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ankyrin repeat-containing protein At5g02620-like
产物	ankyrin repeat-containing protein At5g02620-like
Arabidopsis	`AT5G51160` (AT5G51160) Ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:835190] identity=28.3; qcov=0.895; evalue=3.28e-31; confidence=low
Rice	`Os11g0182900` - identity=27.9; qcov=0.843; evalue=1.23e-33; confidence=low
GO	GO:0005886 (plasma membrane); GO:0008157 (protein phosphatase 1 binding); GO:0019888 (protein phosphatase regulator activity); GO:0035304 (GO:0035304)
KEGG	-
Pfam	PF00023 (Ank); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4); PF13857 (Ank_5); PF13962 (PGG)
InterPro	-
eggNOG	-
NR	GeneID:130995176

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057776311.1`
2	Nucleus	细胞核	0.00000	`XP_057776311.1`
3	Chromosome	染色体	0.00000	`XP_057776311.1`
4	Centromere	着丝粒	0.00000	`XP_057776311.1`
5	Chromatin	染色质	0.00000	`XP_057776311.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:58842145`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A9,B127,B13,B55,C28
`Chr7:58842147`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr7:58842148`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A20,B13
`Chr7:58842180`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C44
`Chr7:58842201`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C85
`Chr7:58842207`	`C`	`T`	EMS_canonical_SNV	stop_gained	20	A21,A22,B119,B120,B125,B23,B38,B44,B53,B6,B68,B74,B89,C11,C17,C58,C60,C67,C69,D1
`Chr7:58842213`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B131
`Chr7:58842288`	`G`	`GA`	1bp_insertion	frameshift_variant	9	A13,B118,B42,B75,C42,C64,C72,C76,C9
`Chr7:58842344`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr7:58842359`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B15
`Chr7:58842372`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B56,B96,C23,C56
`Chr7:58842376`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B128,B90,C59

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776311.1

446 aa

223

446

Ank_2

Ank

Ank_4

Ank_5

Ank_2

Ank

Ank_3

PGG

PF12796 Ank_2 31-92 aa PF00023 Ank 73-91 aa PF00023 Ank 105-125 aa PF13637 Ank_4 143-193 aa PF13857 Ank_5 164-213 aa PF12796 Ank_2 169-230 aa PF00023 Ank 172-194 aa PF13606 Ank_3 172-196 aa PF13962 PGG 245-352 aa

XP_057776312.1

446 aa

223

446

Ank_2

Ank

Ank_4

Ank_5

Ank_2

Ank

Ank_3

PGG

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776311.1`	Pfam	`PF12796`	Ank_2	Repeat	31	92	8.9e-25	87.8	Ankyrin repeats (3 copies)
`XP_057776311.1`	Pfam	`PF00023`	Ank	Repeat	73	91	3e-20	71.9	Ankyrin repeat
`XP_057776311.1`	Pfam	`PF00023`	Ank	Repeat	105	125	3e-20	71.9	Ankyrin repeat
`XP_057776311.1`	Pfam	`PF13637`	Ank_4	Repeat	143	193	1.5e-21	76.7	Ankyrin repeats (many copies)
`XP_057776311.1`	Pfam	`PF13857`	Ank_5	Repeat	164	213	7.8e-17	61.9	Ankyrin repeats (many copies)
`XP_057776311.1`	Pfam	`PF12796`	Ank_2	Repeat	169	230	8.9e-25	87.8	Ankyrin repeats (3 copies)
`XP_057776311.1`	Pfam	`PF00023`	Ank	Repeat	172	194	3e-20	71.9	Ankyrin repeat
`XP_057776311.1`	Pfam	`PF13606`	Ank_3	Repeat	172	196	5e-18	63.8	Ankyrin repeat
`XP_057776311.1`	Pfam	`PF13962`	PGG	Domain	245	352	3.4e-23	82.4	Domain of unknown function
`XP_057776312.1`	Pfam	`PF12796`	Ank_2	Repeat	31	92	8.9e-25	87.8	Ankyrin repeats (3 copies)
`XP_057776312.1`	Pfam	`PF00023`	Ank	Repeat	73	91	3e-20	71.9	Ankyrin repeat
`XP_057776312.1`	Pfam	`PF00023`	Ank	Repeat	105	125	3e-20	71.9	Ankyrin repeat
`XP_057776312.1`	Pfam	`PF13637`	Ank_4	Repeat	143	193	1.5e-21	76.7	Ankyrin repeats (many copies)
`XP_057776312.1`	Pfam	`PF13857`	Ank_5	Repeat	164	213	7.8e-17	61.9	Ankyrin repeats (many copies)
`XP_057776312.1`	Pfam	`PF12796`	Ank_2	Repeat	169	230	8.9e-25	87.8	Ankyrin repeats (3 copies)
`XP_057776312.1`	Pfam	`PF00023`	Ank	Repeat	172	194	3e-20	71.9	Ankyrin repeat
`XP_057776312.1`	Pfam	`PF13606`	Ank_3	Repeat	172	196	5e-18	63.8	Ankyrin repeat
`XP_057776312.1`	Pfam	`PF13962`	PGG	Domain	245	352	3.4e-23	82.4	Domain of unknown function

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057920329.1
CTAGCTTTACTTTCTGCAAAAATAAAACATTATATAAACTGCAGAACAGAAGACCTTGTATTGTATGTTATTATAGTTCATCATTTGAGATCAATTGCAGCTCTCCTTCTAAGTTCTAAGCCACCATTTTAATAAAGGCCTCTGAAAGGAGAAACAGGAAAGGGCCATTACTATAAAGTTTGAAAGAATGAGTGGTGAAAAACTTTATGATGCTATATTGAAAGGGGATGTAACAAGATTTCGAGAAGTGGTTCAACAAG...

XM_057920328.1
AAAGCTGGCCTGTCTATTGTGTATGTGTGTGTTAATATGCACATACGCAATCTGTGTAAAATTATGCAGGCCTCTGAAAGGAGAAACAGGAAAGGGCCATTACTATAAAGTTTGAAAGAATGAGTGGTGAAAAACTTTATGATGCTATATTGAAAGGGGATGTAACAAGATTTCGAGAAGTGGTTCAACAAGATCCATATCTTATTGAAAGTGCTTCATTTGCATGTTCAAGAAATGTTGTACACATAGCAACACTGCGG...

CDS

2 records

下载 CDS FASTA

LOC130995176
ATGAGTGGTGAAAAACTTTATGATGCTATATTGAAAGGGGATGTAACAAGATTTCGAGAAGTGGTTCAACAAGATCCATATCTTATTGAAAGTGCTTCATTTGCATGTTCAAGAAATGTTGTACACATAGCAACACTGCGGGGGCAAGTAGCCATGGTTGAAGAGGTGTTGAACATCAACCCGCAGCTAGCTCGATATTTGGACTCCCAAAAATCATCGCCTCTTCACATTGCAGCAGCGCAAGGGAACGTTGAGATCGC...

Protein

2 records

下载 Protein FASTA

XP_057776311.1
MSGEKLYDAILKGDVTRFREVVQQDPYLIESASFACSRNVVHIATLRGQVAMVEEVLNINPQLARYLDSQKSSPLHIAAAQGNVEIAKKLLSVAPEMCWWIDDQGMNPVHIAAMKGHEEVLKEMLQLDLLPAMERLHRGQTVLHLCVKHRQLSTLKVSVEKLGELVYAKDDDGETLLHLAVRSNQLEMVEYLVENNKMKKLTENSMGKTALDILEECAPHKRSEMKRILLSLSNQQKSLVFAYLKMTDMTMVVVVLIATM...

XP_057776312.1
MSGEKLYDAILKGDVTRFREVVQQDPYLIESASFACSRNVVHIATLRGQVAMVEEVLNINPQLARYLDSQKSSPLHIAAAQGNVEIAKKLLSVAPEMCWWIDDQGMNPVHIAAMKGHEEVLKEMLQLDLLPAMERLHRGQTVLHLCVKHRQLSTLKVSVEKLGELVYAKDDDGETLLHLAVRSNQLEMVEYLVENNKMKKLTENSMGKTALDILEECAPHKRSEMKRILLSLSNQQKSLVFAYLKMTDMTMVVVVLIATM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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