当前解析结果
SmilChr07G004604| 统一新 Gene ID | SmilChr07G004604 |
|---|---|
| 名称 | SmilChr07G004604 |
| 描述 | ankyrin repeat-containing protein At2g01680-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 58847311 - 58847955 / + |
| NCBI Gene ID | LOC130994524 |
|---|---|
| GeneID | 130994524 |
| locus_tag | - |
| NCBI Name | LOC130994524 |
| 原始查询 | SmilChr07G004604 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ankyrin repeat-containing protein At2g01680-like |
| 产物 | ankyrin repeat-containing protein At2g01680-like |
| Arabidopsis | AT5G02620 (ANK1)ankyrin-like1 [Source:NCBI gene (formerly Entrezgene);Acc:831855] identity=29.4; qcov=0.97; evalue=1.18e-21; confidence=low |
| Rice | Os01g0837000 (OsNPR4)- identity=31.8; qcov=0.931; evalue=1.47e-15; confidence=low |
| GO | GO:0005886 (plasma membrane); GO:0008157 (protein phosphatase 1 binding); GO:0019888 (protein phosphatase regulator activity); GO:0035304 (GO:0035304) |
| KEGG | - |
| Pfam | PF00023 (Ank); PF12796 (Ank_2); PF13637 (Ank_4) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994524 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.60000 | XP_057775551.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057775551.1 |
| 3 | Cell membrane | 细胞膜 | 0.20000 | XP_057775551.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057775551.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057775551.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:58847395 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A18 |
Chr7:58847475 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A18 |
Chr7:58847484 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C15 |
Chr7:58847486 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B137 |
Chr7:58847489 |
AC |
A |
1bp_deletion | frameshift_variant | 7 | B10,B118,B124,B42,B43,B95,C60 |
Chr7:58847523 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B122,D5 |
Chr7:58847535 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B122,D5 |
Chr7:58847547 |
CCT |
C |
2bp_deletion | frameshift_variant | 57 | A1,A15,A19,A25,A7,B100,B102,B103,B109,B11,B113,B122,B123,B14,B15,B16,B17,B18,B38,B39,B41,B5,B63,B64,B67,B72,B79,B8,B83,B84,B94,C10,C14,C17,C18,C2,C21,C28,C35,C36,C37,C39,C43,C44,C45,C47,C5,C7,C70,C72,C76,C78,C79,C86,C9,D1,D8 |
Chr7:58847551 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A18 |
Chr7:58847581 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B11,C30 |
Chr7:58847601 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C39 |
Chr7:58847622 |
A |
AC |
1bp_insertion | frameshift_variant | 3 | B101,B44,B80 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057775551.1PF12796
Ank_2 8-94 aa
PF00023
Ank 75-93 aa
PF00023
Ank 108-128 aa
PF13637
Ank_4 111-160 aa
PF12796
Ank_2 112-190 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057775551.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 8 | 94 | 4e-25 | 88.9 | Ankyrin repeats (3 copies) |
XP_057775551.1 |
Pfam | PF00023 |
Ank | Repeat | 75 | 93 | 2.2e-21 | 75.5 | Ankyrin repeat |
XP_057775551.1 |
Pfam | PF00023 |
Ank | Repeat | 108 | 128 | 2.2e-21 | 75.5 | Ankyrin repeat |
XP_057775551.1 |
Pfam | PF13637 |
Ank_4 | Repeat | 111 | 160 | 1.2e-20 | 73.8 | Ankyrin repeats (many copies) |
XP_057775551.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 112 | 190 | 4e-25 | 88.9 | Ankyrin repeats (3 copies) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。