Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004608`

染色体: Chr07 坐标: 58865547-58883498 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004608`
名称	SmilChr07G004608
描述	ankyrin repeat-containing protein At2g01680-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	58865547 - 58883498 / `+`

ID 对照

NCBI Gene ID	`LOC130995182`
GeneID	`130995182`
locus_tag	`-`
NCBI Name	`LOC130995182`
原始查询	`SmilChr07G004608`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ankyrin repeat-containing protein At2g01680-like
产物	ankyrin repeat-containing protein At2g01680-like
Arabidopsis	`AT5G51160` (AT5G51160) Ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:835190] identity=27.3; qcov=0.98; evalue=3.82e-30; confidence=low
Rice	`Os11g0182900` - identity=27.3; qcov=1.05; evalue=1.55e-26; confidence=low
GO	GO:0005886 (plasma membrane); GO:0008157 (protein phosphatase 1 binding); GO:0019888 (protein phosphatase regulator activity); GO:0035304 (GO:0035304)
KEGG	-
Pfam	PF00023 (Ank); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4); PF13857 (Ank_5); PF13962 (PGG)
InterPro	-
eggNOG	-
NR	GeneID:130995182

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057776319.1`
2	Nucleus	细胞核	0.00000	`XP_057776319.1`
3	Chromosome	染色体	0.00000	`XP_057776319.1`
4	Centromere	着丝粒	0.00000	`XP_057776319.1`
5	Chromatin	染色质	0.00000	`XP_057776319.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:58865891`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C1
`Chr7:58865915`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C1
`Chr7:58865972`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C43
`Chr7:58865994`	`A`	`AG`	1bp_insertion	frameshift_variant	1	C29
`Chr7:58865994`	`A`	`AG`	1bp_insertion	CDS_variant	1	C29
`Chr7:58865999`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B137,B26,B89,D10
`Chr7:58866012`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B137,B26,B89,C79,D10
`Chr7:58866024`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B135,C81
`Chr7:58866037`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A2,B115,B71
`Chr7:58866065`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D9
`Chr7:58866082`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A7,C29
`Chr7:58882819`	`GGT`	`G`	2bp_deletion	frameshift_variant	20	A10,A2,A21,A22,B1,B125,B127,B133,B139,B6,B86,B99,C15,C21,C4,C67,C71,C73,D1,D3

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776319.1

344 aa

172

344

Ank

Ank_2

Ank_4

Ank

Ank_4

Ank_2

Ank_5

Ank

Ank_3

PGG

PF00023 Ank 15-33 aa PF12796 Ank_2 17-106 aa PF13637 Ank_4 51-101 aa PF00023 Ank 81-112 aa PF13637 Ank_4 85-135 aa PF12796 Ank_2 111-154 aa PF13857 Ank_5 111-155 aa PF00023 Ank 114-135 aa PF13606 Ank_3 114-136 aa PF13962 PGG 188-295 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776319.1`	Pfam	`PF00023`	Ank	Repeat	15	33	2.8e-21	75.1	Ankyrin repeat
`XP_057776319.1`	Pfam	`PF12796`	Ank_2	Repeat	17	106	8.5e-22	78.3	Ankyrin repeats (3 copies)
`XP_057776319.1`	Pfam	`PF13637`	Ank_4	Repeat	51	101	1.4e-18	67.3	Ankyrin repeats (many copies)
`XP_057776319.1`	Pfam	`PF00023`	Ank	Repeat	81	112	2.8e-21	75.1	Ankyrin repeat
`XP_057776319.1`	Pfam	`PF13637`	Ank_4	Repeat	85	135	1.4e-18	67.3	Ankyrin repeats (many copies)
`XP_057776319.1`	Pfam	`PF12796`	Ank_2	Repeat	111	154	8.5e-22	78.3	Ankyrin repeats (3 copies)
`XP_057776319.1`	Pfam	`PF13857`	Ank_5	Repeat	111	155	2.6e-20	73.0	Ankyrin repeats (many copies)
`XP_057776319.1`	Pfam	`PF00023`	Ank	Repeat	114	135	2.8e-21	75.1	Ankyrin repeat
`XP_057776319.1`	Pfam	`PF13606`	Ank_3	Repeat	114	136	1.2e-19	68.7	Ankyrin repeat
`XP_057776319.1`	Pfam	`PF13962`	PGG	Domain	188	295	1.1e-24	87.2	Domain of unknown function

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057920336.1
AAGAAACTCTACGATGCTGCAACAAAGGGGGATTTAGCAACACTCCAGCAACTGCTGCGACAAGATCCACACCTTCTCGATGCAGTCTCATTTCCATATTCAAGAAATCTATTACACATAGCAGTCACGCACGGACAAGTACGCATCGCGGAAGAGGTGTTGAAGATGAATCCGCGGCTAGCTCGGATCCTAGACTCCCAGAAACTGTCGCCTCTTCACATCGCCGTAGAAGAAGGGAGGCTCGAAATGGTGAAGAGACT...

CDS

1 records

下载 CDS FASTA

LOC130995182
ATGAATCCGCGGCTAGCTCGGATCCTAGACTCCCAGAAACTGTCGCCTCTTCACATCGCCGTAGAAGAAGGGAGGCTCGAAATGGTGAAGAGACTGTTAGTGGTAGCCCCAGAGACGTGCTGGTGGCGAGACGGCCACGATATGAACCCGGTTCACGTTGCGGCCATGGATGGGAATGTGGAGATCTTGGAGGAGCTGCTGCAGCAAGATCTGTTTCCAGCAATGGAGAGGCTGCGGCGCGGGCAGACTGTGCTGCATCT...

Protein

1 records

下载 Protein FASTA

XP_057776319.1
MNPRLARILDSQKLSPLHIAVEEGRLEMVKRLLVVAPETCWWRDGHDMNPVHVAAMDGNVEILEELLQQDLFPAMERLRRGQTVLHLCVKHRQLRALKVLVQKLGELVCARDDDGETLLHLAVRCNQLEMVKYLVQITKLDKEATNSMGKTALDILKESPKDPTTYSDMRRILNSLSDHSTLLGILPKMTDITMVVVVLIATMAFQAAVSPPGGVWQDDTPSHRAGQAVMASTHPKMYKHFVNANTTAFVSSLVTIMLIT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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