Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004611`

染色体: Chr07 坐标: 58922153-58924478 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004611`
名称	SmilChr07G004611
描述	ankyrin repeat-containing protein ITN1-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	58922153 - 58924478 / `+`

ID 对照

NCBI Gene ID	`LOC130995184`
GeneID	`130995184`
locus_tag	`-`
NCBI Name	`LOC130995184`
原始查询	`SmilChr07G004611`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ankyrin repeat-containing protein ITN1-like
产物	ankyrin repeat-containing protein ITN1-like
Arabidopsis	`AT5G54710` (AT5G54710) Ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:835560] identity=27.1; qcov=1.02; evalue=1.12e-24; confidence=low
Rice	`Os11g0182900` - identity=24.2; qcov=0.984; evalue=9.38e-25; confidence=weak
GO	GO:0005886 (plasma membrane); GO:0008157 (protein phosphatase 1 binding); GO:0019888 (protein phosphatase regulator activity); GO:0035304 (GO:0035304)
KEGG	-
Pfam	PF00023 (Ank); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4); PF13962 (PGG)
InterPro	-
eggNOG	-
NR	GeneID:130995184

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057776320.1`
2	Nucleus	细胞核	0.00000	`XP_057776320.1`
3	Chromosome	染色体	0.00000	`XP_057776320.1`
4	Centromere	着丝粒	0.00000	`XP_057776320.1`
5	Chromatin	染色质	0.00000	`XP_057776320.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:58922422`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A24,B94
`Chr7:58922446`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A19,B32,B90,B92
`Chr7:58922471`	`G`	`GCT`	2bp_insertion	frameshift_variant	8	B84,B85,C13,C14,C25,C46,C73,C77
`Chr7:58922504`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B30
`Chr7:58922542`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A8,B111,B3,B52,B81
`Chr7:58922585`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A5,B111,B122,B19,D5
`Chr7:58922609`	`G`	`GT`	1bp_insertion	frameshift_variant	12	B110,B128,B18,B22,B43,B90,B92,C19,C20,C27,C30,C61
`Chr7:58922647`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A24,B94
`Chr7:58922657`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C71
`Chr7:58922693`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B30,B68
`Chr7:58922698`	`TGG`	`T`	2bp_deletion	frameshift_variant	8	A23,B135,B44,B58,B78,B89,C27,C54
`Chr7:58922702`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	D6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776320.1

374 aa

187

374

Ank_2

Ank

Ank_2

Ank

Ank_2

Ank_4

Ank_2

Ank

Ank_3

PGG

PF12796 Ank_2 6-80 aa PF00023 Ank 28-46 aa PF12796 Ank_2 30-120 aa PF00023 Ank 60-80 aa PF12796 Ank_2 93-155 aa PF13637 Ank_4 98-147 aa PF12796 Ank_2 124-167 aa PF00023 Ank 127-148 aa PF13606 Ank_3 127-150 aa PF13962 PGG 202-308 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776320.1`	Pfam	`PF12796`	Ank_2	Repeat	6	80	8.8e-40	135.9	Ankyrin repeats (3 copies)
`XP_057776320.1`	Pfam	`PF00023`	Ank	Repeat	28	46	2.3e-20	72.3	Ankyrin repeat
`XP_057776320.1`	Pfam	`PF12796`	Ank_2	Repeat	30	120	8.8e-40	135.9	Ankyrin repeats (3 copies)
`XP_057776320.1`	Pfam	`PF00023`	Ank	Repeat	60	80	2.3e-20	72.3	Ankyrin repeat
`XP_057776320.1`	Pfam	`PF12796`	Ank_2	Repeat	93	155	8.8e-40	135.9	Ankyrin repeats (3 copies)
`XP_057776320.1`	Pfam	`PF13637`	Ank_4	Repeat	98	147	5.2e-19	68.6	Ankyrin repeats (many copies)
`XP_057776320.1`	Pfam	`PF12796`	Ank_2	Repeat	124	167	8.8e-40	135.9	Ankyrin repeats (3 copies)
`XP_057776320.1`	Pfam	`PF00023`	Ank	Repeat	127	148	2.3e-20	72.3	Ankyrin repeat
`XP_057776320.1`	Pfam	`PF13606`	Ank_3	Repeat	127	150	8.7e-20	69.2	Ankyrin repeat
`XP_057776320.1`	Pfam	`PF13962`	PGG	Domain	202	308	1e-22	80.8	Domain of unknown function

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057920337.1
CCTTTAAACAACTTTTCCCTTTTTCACCTACACAAAATATACATTTCTTAATTCTCGTGCCCAAAAAAAAGGTCTCACTTACAGTGGGATGGAGGGAGTATAATGGTTGTCTTAAAATGCAGGCCCCTGGAAAGCAAAAACAGAAAAGGGCCATTAATATAAATAGTTTGAAAGAATGAGTGGCGAAAAGCTTTATGATGTTGTATCAAAAGGGGATGTAACAAAACTTCAACAAGATCCATATCTTGTCGAAAGTGTTT...

CDS

1 records

下载 CDS FASTA

LOC130995184
ATGTTCAAGAAAGCCATGGTTGAAGAGTTGTTGAACATCAACCCATTGCTAGCTCGAAATTTGGCGGACTCCCAAAAATCGTCGCCTCTTCACATAGCAGCAGCACAAGGGAATGTTGAGATCGCCAAGAAATTGGTATCAGTGGCCCCAGAGATGCGCTGGTGTCGCAACGGACAAGGCCTGAACCCGGTTCACATTGCAGCCATGAACGGGCATGTTGAGATCTTGGAGGAGCTGCTTCGACTGGATCTGTTTCCTGC...

Protein

1 records

下载 Protein FASTA

XP_057776320.1
MFKKAMVEELLNINPLLARNLADSQKSSPLHIAAAQGNVEIAKKLVSVAPEMRWCRNGQGLNPVHIAAMNGHVEILEELLRLDLFPAMERVHRGQTVLHLCVKHRQLRALKVLVEKLCDLVCAKDDDGETLLHWAARSDQHEVIKYLAKETKIDKALENSMGKTALVIFEENPHHRSYPKYTKYILSPSYYSQSAALLQLISKKRDQTMVVMVLIATMAFQAAISPPGGVWQDNTPPHRAGEAIMASTHPKMYKHLVRAN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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