Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004619`

染色体: Chr07 坐标: 59002455-59004396 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004619`
名称	SmilChr07G004619
描述	uncharacterized SmilChr07G004619
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	59002455 - 59004396 / `+`

ID 对照

NCBI Gene ID	`LOC130995208`
GeneID	`130995208`
locus_tag	`-`
NCBI Name	`LOC130995208`
原始查询	`SmilChr07G004619`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Mitochondrial substrate carrier family protein [Source:NCBI gene (formerly Entrezgene);Acc:843613]; symbol=AT1G72820; hit=AT1G72820; species=arabidopsis; confidence=high
产物	Mitochondrial substrate carrier family protein [Source:NCBI gene (formerly Entrezgene);Acc:843613]; symbol=AT1G72820; hit=AT1G72820; species=arabidopsis; confidence=high
Arabidopsis	`AT1G72820` (AT1G72820) Mitochondrial substrate carrier family protein [Source:NCBI gene (formerly Entrezgene);Acc:843613] identity=69.9; qcov=1; evalue=8.85e-168; confidence=high
Rice	`Os10g0397800` (OSJNBb0058B20.12) - identity=58.3; qcov=0.944; evalue=2.77e-105; confidence=high
GO	GO:0055085 (transmembrane transport)
KEGG	-
Pfam	PF00153 (Mito_carr)
InterPro	-
eggNOG	-
NR	GeneID:130995208

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057776348.1`
2	Mitochondrion membrane	线粒体膜	0.40000	`XP_057776348.1`
3	Mitochondrion inner membrane	线粒体内膜	0.40000	`XP_057776348.1`
4	Chloroplast membrane	叶绿体膜	0.40000	`XP_057776348.1`
5	Nucleus	细胞核	0.00000	`XP_057776348.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:59003095`	`T`	`TG`	1bp_insertion	frameshift_variant	3	B32,B90,B92
`Chr7:59003095`	`T`	`TG`	1bp_insertion	CDS_variant	3	B32,B90,B92
`Chr7:59003236`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C52
`Chr7:59003275`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B16,B18,C43,C82
`Chr7:59003349`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B103
`Chr7:59003420`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B113,B16,B18,C43,C82
`Chr7:59003431`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B1,B129,B21,B28,C8
`Chr7:59003531`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B113
`Chr7:59003542`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B128,B21,B90
`Chr7:59003623`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B22,C72,C76,C84,C9
`Chr7:59003656`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B124,B56,B85,B96,C42
`Chr7:59003721`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B118,B67

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776348.1

356 aa

178

356

Mito_carr

PF00153 Mito_carr 42-109 aa PF00153 Mito_carr 125-219 aa PF00153 Mito_carr 253-349 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776348.1`	Pfam	`PF00153`	Mito_carr	Repeat	42	109	2.6e-53	178.4	Mitochondrial carrier protein
`XP_057776348.1`	Pfam	`PF00153`	Mito_carr	Repeat	125	219	2.6e-53	178.4	Mitochondrial carrier protein
`XP_057776348.1`	Pfam	`PF00153`	Mito_carr	Repeat	253	349	2.6e-53	178.4	Mitochondrial carrier protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057920365.1
TTGCAGCAAATCAATCAGCCCGCAGCCCACCACATTCTGTAGGCCTGCGCCACACTGAATCCCGAGACGTGAAGAACACCATCTTCTCGAAACAGTAACCGACACGTGTCCGCTTCTCCCATACTCCAAAACCCTCACCTCCCAAATCCCAAATCCATTAACCCTCACACACACACACACACACTGTCGCAACTTTTCTTTACTTATTTACTAATCCATTTTAGCGTCGTTGAATTCCTTCGCCTCAATCCTATTTATAA...

CDS

1 records

下载 CDS FASTA

LOC130995208
ATGAGTTTGAGCACCGCAGAGGATGATTCAGCGACTGAAATCCATCTGCCTGCAGATATAGATTGGGAGATGCTTGATAAATCCAAGTTCTTCTTCCTCGGTGCTGCTCTGTTTTCAGGCGTTTCGGGCACTCTCTACCCGATTGTGGTGCTGAAAACGCGGCAGCAGGTGATGCTGAATGACTGCCCGTGCTTCAAAATGGCGGCCTCGATCTTTAGGAACGAGGGGTGGAGGGGTTTCTACCGCGGTTTTGGGACTTC...

Protein

1 records

下载 Protein FASTA

XP_057776348.1
MSLSTAEDDSATEIHLPADIDWEMLDKSKFFFLGAALFSGVSGTLYPIVVLKTRQQVMLNDCPCFKMAASIFRNEGWRGFYRGFGTSLMGTIPARALYMGALEVTKSNVGNVASGQLGLSEASASAIANAAAGLSAAMAAQLVWTPIDVVSQRLMVQGGVGDGGSCTVGLKRYNGGIDAFRKIVRADGVRGLYRGFGISILTYAPSNAVWWASYSMAHRGIWGCIGCYFCKKSENSNGGNGGNGYRPDGKSVMAVQALSA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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