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调控/突变
TF 结合位点 TF 靶基因 EMS 突变
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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G004620

染色体: Chr07 坐标: 59011004-59015116 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G004620
名称SmilChr07G004620
描述nuclear transcription factor Y subunit A-7-like
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向59011004 - 59015116 / -

ID 对照

NCBI Gene IDLOC130995212
GeneID130995212
locus_tag-
NCBI NameLOC130995212
原始查询SmilChr07G004620

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述nuclear transcription factor Y subunit A-7-like
产物nuclear transcription factor Y subunit A-7-like
ArabidopsisAT1G17590 (NF-YA8)
nuclear factor Y, subunit A8 [Source:NCBI gene (formerly Entrezgene);Acc:838335]
identity=51.2; qcov=0.604; evalue=1.56e-41; confidence=medium
RiceOs03g0411100 (HAP2E)
-
identity=43.9; qcov=0.68; evalue=2.36e-39; confidence=medium
GOGO:0000978 (RNA polymerase II cis-regulatory region sequence-specific DNA binding); GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0006357 (regulation of transcription by RNA polymerase II); GO:0016602 (CCAAT-binding factor complex)
KEGG-
PfamPF02045 (CBFB_NFYA)
InterPro-
eggNOG-
NRGeneID:130995212

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057776353.1
2 Chromosome 染色体 0.00000 XP_057776353.1
3 Centromere 着丝粒 0.00000 XP_057776353.1
4 Chromatin 染色质 0.00000 XP_057776353.1
5 Telomere 端粒 0.00000 XP_057776353.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:59011821 C T EMS_canonical_SNV CDS_variant 1 B91
Chr7:59011842 G A EMS_canonical_SNV CDS_variant 1 B91
Chr7:59011881 C T EMS_canonical_SNV CDS_variant 3 A24,B28,B94
Chr7:59011928 C T EMS_canonical_SNV CDS_variant 1 B91
Chr7:59011929 G A EMS_canonical_SNV CDS_variant 1 C87
Chr7:59011963 G A EMS_canonical_SNV CDS_variant 1 B104
Chr7:59012009 C T EMS_canonical_SNV CDS_variant 1 D9
Chr7:59012669 C T EMS_canonical_SNV CDS_variant 4 A14,B37,B57,D3
Chr7:59012713 G A EMS_canonical_SNV CDS_variant 2 B84,C13
Chr7:59012716 G A EMS_canonical_SNV CDS_variant 3 A3,B113,B26
Chr7:59012776 C T EMS_canonical_SNV CDS_variant 4 A21,B32,B90,B92
Chr7:59012777 G A EMS_canonical_SNV CDS_variant 5 A15,A20,B27,B53,C49

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776353.1
299 aa
N
1
150
299
CBFB_NFYA
C
PF02045 CBFB_NFYA 105-236 aa
XP_057776354.1
299 aa
N
1
150
299
CBFB_NFYA
C
PF02045 CBFB_NFYA 105-236 aa
XP_057776355.1
299 aa
N
1
150
299
CBFB_NFYA
C
PF02045 CBFB_NFYA 105-236 aa
XP_057776356.1
299 aa
N
1
150
299
CBFB_NFYA
C
PF02045 CBFB_NFYA 105-236 aa
XP_057776357.1
299 aa
N
1
150
299
CBFB_NFYA
C
PF02045 CBFB_NFYA 105-236 aa
XP_057776358.1
299 aa
N
1
150
299
CBFB_NFYA
C
PF02045 CBFB_NFYA 105-236 aa
XP_057776359.1
299 aa
N
1
150
299
CBFB_NFYA
C
PF02045 CBFB_NFYA 105-236 aa
XP_057776360.1
299 aa
N
1
150
299
CBFB_NFYA
C
PF02045 CBFB_NFYA 105-236 aa
XP_057776362.1
299 aa
N
1
150
299
CBFB_NFYA
C
PF02045 CBFB_NFYA 105-236 aa
XP_057776363.1
299 aa
N
1
150
299
CBFB_NFYA
C
PF02045 CBFB_NFYA 105-236 aa
XP_057776364.1
275 aa
N
1
138
275
CBFB_NFYA
C
PF02045 CBFB_NFYA 80-212 aa
XP_057776365.1
275 aa
N
1
138
275
CBFB_NFYA
C
PF02045 CBFB_NFYA 80-212 aa
XP_057776366.1
275 aa
N
1
138
275
CBFB_NFYA
C
PF02045 CBFB_NFYA 80-212 aa
XP_057776367.1
275 aa
N
1
138
275
CBFB_NFYA
C
PF02045 CBFB_NFYA 80-212 aa
XP_057776368.1
275 aa
N
1
138
275
CBFB_NFYA
C
PF02045 CBFB_NFYA 80-212 aa
XP_057776369.1
275 aa
N
1
138
275
CBFB_NFYA
C
PF02045 CBFB_NFYA 80-212 aa
XP_057776370.1
275 aa
N
1
138
275
CBFB_NFYA
C
PF02045 CBFB_NFYA 80-212 aa
XP_057776371.1
275 aa
N
1
138
275
CBFB_NFYA
C
PF02045 CBFB_NFYA 80-212 aa
XP_057776373.1
275 aa
N
1
138
275
CBFB_NFYA
C
PF02045 CBFB_NFYA 80-212 aa
XP_057776374.1
275 aa
N
1
138
275
CBFB_NFYA
C
PF02045 CBFB_NFYA 80-212 aa
XP_057776375.1
275 aa
N
1
138
275
CBFB_NFYA
C
PF02045 CBFB_NFYA 80-212 aa
XP_057776376.1
275 aa
N
1
138
275
CBFB_NFYA
C
PF02045 CBFB_NFYA 80-212 aa
XP_057776377.1
275 aa
N
1
138
275
CBFB_NFYA
C
PF02045 CBFB_NFYA 80-212 aa
XP_057776378.1
275 aa
N
1
138
275
CBFB_NFYA
C
PF02045 CBFB_NFYA 80-212 aa
XP_057776379.1
275 aa
N
1
138
275
CBFB_NFYA
C
PF02045 CBFB_NFYA 80-212 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057776353.1 Pfam PF02045 CBFB_NFYA Domain 105 236 1.5e-34 119.6 CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
XP_057776354.1 Pfam PF02045 CBFB_NFYA Domain 105 236 1.5e-34 119.6 CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
XP_057776355.1 Pfam PF02045 CBFB_NFYA Domain 105 236 1.5e-34 119.6 CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
XP_057776356.1 Pfam PF02045 CBFB_NFYA Domain 105 236 1.5e-34 119.6 CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
XP_057776357.1 Pfam PF02045 CBFB_NFYA Domain 105 236 1.5e-34 119.6 CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
XP_057776358.1 Pfam PF02045 CBFB_NFYA Domain 105 236 1.5e-34 119.6 CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
XP_057776359.1 Pfam PF02045 CBFB_NFYA Domain 105 236 1.5e-34 119.6 CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
XP_057776360.1 Pfam PF02045 CBFB_NFYA Domain 105 236 1.5e-34 119.6 CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
XP_057776362.1 Pfam PF02045 CBFB_NFYA Domain 105 236 1.5e-34 119.6 CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
XP_057776363.1 Pfam PF02045 CBFB_NFYA Domain 105 236 1.5e-34 119.6 CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
XP_057776364.1 Pfam PF02045 CBFB_NFYA Domain 80 212 9.7e-35 120.2 CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
XP_057776365.1 Pfam PF02045 CBFB_NFYA Domain 80 212 9.7e-35 120.2 CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
XP_057776366.1 Pfam PF02045 CBFB_NFYA Domain 80 212 9.7e-35 120.2 CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
XP_057776367.1 Pfam PF02045 CBFB_NFYA Domain 80 212 9.7e-35 120.2 CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
XP_057776368.1 Pfam PF02045 CBFB_NFYA Domain 80 212 9.7e-35 120.2 CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
XP_057776369.1 Pfam PF02045 CBFB_NFYA Domain 80 212 9.7e-35 120.2 CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
XP_057776370.1 Pfam PF02045 CBFB_NFYA Domain 80 212 9.7e-35 120.2 CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
XP_057776371.1 Pfam PF02045 CBFB_NFYA Domain 80 212 9.7e-35 120.2 CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
XP_057776373.1 Pfam PF02045 CBFB_NFYA Domain 80 212 9.7e-35 120.2 CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
XP_057776374.1 Pfam PF02045 CBFB_NFYA Domain 80 212 9.7e-35 120.2 CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
XP_057776375.1 Pfam PF02045 CBFB_NFYA Domain 80 212 9.7e-35 120.2 CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
XP_057776376.1 Pfam PF02045 CBFB_NFYA Domain 80 212 9.7e-35 120.2 CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
XP_057776377.1 Pfam PF02045 CBFB_NFYA Domain 80 212 9.7e-35 120.2 CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
XP_057776378.1 Pfam PF02045 CBFB_NFYA Domain 80 212 9.7e-35 120.2 CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
XP_057776379.1 Pfam PF02045 CBFB_NFYA Domain 80 212 9.7e-35 120.2 CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

25 records

下载 cDNA FASTA
XM_057920387.1
CAATAAAAAAATATTAAACTTCTGTGAAGTCTTTTCCCCTAAATATAAAGATTGCCCCTTTCAAGAATCTTAGAGTGAAAAAAGAATGTGGTGGTGGTGGTGAGGTGTTGCATATGAAGATTAAACAAAGTTAAAAATTGAATCTTGGCTGGTGGTTGATTTTTATTTTGTGGTTTGTTAGCATCGGAACTAAATATGGGCATTTGTCAAAGACAAACGAGGATGTCTGTATTCTTCTTAGCGACTATAACCTCTCTCTG...
XM_057920388.1
CAATAAAAAAATATTAAACTTCTGTGAAGTCTTTTCCCCTAAATATAAAGATTGCCCCTTTCAAGAATCTTAGAGTGAAAAAAGAATGTGGTGGTGGTGGTGAGGTGTTGCATATGAAGATTAAACAAAGTTAAAAATTGAATCTTGGCTGGTGGTTGATTTTTATTTTGTGGGTTAGTACTATTTAAAAATAATCAGTGGGTTTGGTTTTTTCTTTTAATTTTTTTTGGTGGAATACTATTTTTCAGTTTGTTAGCATC...

CDS

25 records

下载 CDS FASTA
LOC130995212
ATGCGAAGCTTATCCATGAAAGATTCTGACCGAACCTCTGCTGACTCGTTTCCAACGTTGTTTGGCAGCCGTATGCCTATGTGGTTCTCTGCCAAGCAGCCCGAGATACCCGTCTCCAAGAGCGTGGCCACGGAGCTGGAAGCCACAAAAGAGCACGATTTTTACCATCTCAAGCTGTCCGACTCTCACTACCAAGAACAAGATTCTTCCTCAACTCTGTCCACGGATCAGTCTCATTCTCATCATGAAGGATCCACCTC...
LOC130995212
ATGCGAAGCTTATCCATGAAAGATTCTGACCGAACCTCTGCTGACTCGTTTCCAACGTTGTTTGGCAGCCGTATGCCTATGTGGTTCTCTGCCAAGCAGCCCGAGATACCCGTCTCCAAGAGCGTGGCCACGGAGCTGGAAGCCACAAAAGAGCACGATTTTTACCATCTCAAGCTGTCCGACTCTCACTACCAAGAACAAGATTCTTCCTCAACTCTGTCCACGGATCAGTCTCATTCTCATCATGAAGGATCCACCTC...

Protein

25 records

下载 Protein FASTA
XP_057776353.1
MRSLSMKDSDRTSADSFPTLFGSRMPMWFSAKQPEIPVSKSVATELEATKEHDFYHLKLSDSHYQEQDSSSTLSTDQSHSHHEGSTSAGSDVQMKNVSFQPEYPSHHQVQMEHNQSSDWASYSMAAAAPYFGGRMTAAYDPNAAIYPQMAGVGQARAVLPLDHNQGIPMFVNAKQYHAILRRRQTRAKLEAQNKVARTRKPYLHESRHHHALRRARGSGGRFLNTKKSDPTAQESEVQHSEGSSSWDTSTTSGSDVSYIF...
XP_057776354.1
MRSLSMKDSDRTSADSFPTLFGSRMPMWFSAKQPEIPVSKSVATELEATKEHDFYHLKLSDSHYQEQDSSSTLSTDQSHSHHEGSTSAGSDVQMKNVSFQPEYPSHHQVQMEHNQSSDWASYSMAAAAPYFGGRMTAAYDPNAAIYPQMAGVGQARAVLPLDHNQGIPMFVNAKQYHAILRRRQTRAKLEAQNKVARTRKPYLHESRHHHALRRARGSGGRFLNTKKSDPTAQESEVQHSEGSSSWDTSTTSGSDVSYIF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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