当前解析结果
SmilChr07G004624| 统一新 Gene ID | SmilChr07G004624 |
|---|---|
| 名称 | SmilChr07G004624 |
| 描述 | uncharacterized SmilChr07G004624 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 59050441 - 59051403 / + |
| NCBI Gene ID | LOC130994526 |
|---|---|
| GeneID | 130994526 |
| locus_tag | - |
| NCBI Name | LOC130994526 |
| 原始查询 | SmilChr07G004624 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ubiquitin fusion degradation 1 [Source:NCBI gene (formerly Entrezgene);Acc:816666]; symbol=UFD1; hit=AT2G21270; species=arabidopsis; confidence=medium |
| 产物 | ubiquitin fusion degradation 1 [Source:NCBI gene (formerly Entrezgene);Acc:816666]; symbol=UFD1; hit=AT2G21270; species=arabidopsis; confidence=medium |
| Arabidopsis | AT2G21270 (UFD1)ubiquitin fusion degradation 1 [Source:NCBI gene (formerly Entrezgene);Acc:816666] identity=38.5; qcov=0.991; evalue=4.5e-71; confidence=medium |
| Rice | Os04g0577000- identity=42.9; qcov=0.7; evalue=1.6e-67; confidence=medium |
| GO | GO:0030433 (GO:0030433); GO:0031593 (polyubiquitin modification-dependent protein binding); GO:0034098 (VCP-NPL4-UFD1 AAA ATPase complex); GO:0071712 (GO:0071712) |
| KEGG | smil04141 (Protein processing in endoplasmic reticulum - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF03152 (UFD1_N1); PF24842 (UFD1_N2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994526 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.80000 | XP_057775553.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057775553.1 |
| 3 | Cytoplasm | 细胞质 | 0.20000 | XP_057775553.1 |
| 4 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057775553.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057775553.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:59050452 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B53,C44 |
Chr7:59050465 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B46,B98,C48 |
Chr7:59050480 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B51,C50,C75 |
Chr7:59050641 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B131,B80,C64,C66 |
Chr7:59050680 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B110 |
Chr7:59050725 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B53 |
Chr7:59050770 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B127 |
Chr7:59050788 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | C57 |
Chr7:59050788 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C57 |
Chr7:59050807 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B53 |
Chr7:59051025 |
GCC |
* |
2bp_deletion | CDS_variant | 5 | B125,B136,B88,C13,C21 |
Chr7:59051028 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | C19 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057775553.1PF03152
UFD1_N1 17-108 aa
PF24842
UFD1_N2 114-189 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057775553.1 |
Pfam | PF03152 |
UFD1_N1 | Domain | 17 | 108 | 9.6e-27 | 93.1 | Ubiquitin fusion degradation protein UFD1, N-terminal subdomain 1 |
XP_057775553.1 |
Pfam | PF24842 |
UFD1_N2 | Domain | 114 | 189 | 1e-24 | 87.0 | Ubiquitin fusion degradation protein UFD1, N-terminal subdomain 2 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。