Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004628`

染色体: Chr07 坐标: 59121469-59127171 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004628`
名称	SmilChr07G004628
描述	ankyrin repeat-containing protein NPR4-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	59121469 - 59127171 / `-`

ID 对照

NCBI Gene ID	`LOC130995193`
GeneID	`130995193`
locus_tag	`-`
NCBI Name	`LOC130995193`
原始查询	`SmilChr07G004628`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ankyrin repeat-containing protein NPR4-like
产物	ankyrin repeat-containing protein NPR4-like
Arabidopsis	`AT5G02620` (ANK1) ankyrin-like1 [Source:NCBI gene (formerly Entrezgene);Acc:831855] identity=27.1; qcov=0.678; evalue=1.72e-25; confidence=low
Rice	`Os11g0435800` (OsSTA258) - identity=24.4; qcov=0.724; evalue=5.18e-25; confidence=weak
GO	GO:0005886 (plasma membrane); GO:0008157 (protein phosphatase 1 binding); GO:0019888 (protein phosphatase regulator activity); GO:0035304 (GO:0035304)
KEGG	-
Pfam	PF00023 (Ank); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4); PF13962 (PGG)
InterPro	-
eggNOG	-
NR	GeneID:130995193

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057776331.1`
2	Endoplasmic reticulum	内质网	0.20000	`XP_057776331.1`
3	Nucleus	细胞核	0.00000	`XP_057776331.1`
4	Chromosome	染色体	0.00000	`XP_057776331.1`
5	Centromere	着丝粒	0.00000	`XP_057776331.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:59121731`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B20,B23,B99
`Chr7:59121744`	`G`	`GAT`	2bp_insertion	frameshift_variant	4	B19,B92,C50,C76
`Chr7:59121744`	`G`	`GAT`	2bp_insertion	CDS_variant	4	B19,B92,C50,C76
`Chr7:59121758`	`ATG`	`A`	2bp_deletion	frameshift_variant	3	B19,C50,C76
`Chr7:59121758`	`ATG`	`A`	2bp_deletion	CDS_variant	3	B19,C50,C76
`Chr7:59121760`	`GAC`	`*`	2bp_deletion	CDS_variant	3	B19,C50,C76
`Chr7:59121763`	`GGT`	`G`	2bp_deletion	frameshift_variant	3	B19,C50,C76
`Chr7:59121763`	`GGT`	`G`	2bp_deletion	CDS_variant	3	B19,C50,C76
`Chr7:59121771`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B51
`Chr7:59121783`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B19
`Chr7:59121821`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B5,B99
`Chr7:59121834`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B3,B5,C18,C76

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776331.1

577 aa

288

577

Ank_2

Ank

Ank_3

Ank_4

Ank_2

Ank_4

Ank_2

Ank_4

Ank

Ank_2

Ank

Ank_4

Ank

Ank_3

PGG

PF12796 Ank_2 12-97 aa PF12796 Ank_2 47-133 aa PF00023 Ank 78-96 aa PF00023 Ank 111-131 aa PF13606 Ank_3 111-132 aa PF13637 Ank_4 114-164 aa PF12796 Ank_2 114-199 aa PF13637 Ank_4 148-194 aa PF12796 Ank_2 198-275 aa PF13637 Ank_4 226-274 aa PF00023 Ank 256-274 aa PF12796 Ank_2 287-346 aa PF00023 Ank 289-309 aa PF00023 Ank 322-346 aa PF13637 Ank_4 326-375 aa PF00023 Ank 355-376 aa PF13606 Ank_3 355-378 aa PF13962 PGG 427-531 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776331.1`	Pfam	`PF12796`	Ank_2	Repeat	12	97	1.3e-52	177.0	Ankyrin repeats (3 copies)
`XP_057776331.1`	Pfam	`PF12796`	Ank_2	Repeat	47	133	1.3e-52	177.0	Ankyrin repeats (3 copies)
`XP_057776331.1`	Pfam	`PF00023`	Ank	Repeat	78	96	6.1e-41	136.8	Ankyrin repeat
`XP_057776331.1`	Pfam	`PF00023`	Ank	Repeat	111	131	6.1e-41	136.8	Ankyrin repeat
`XP_057776331.1`	Pfam	`PF13606`	Ank_3	Repeat	111	132	2.2e-39	129.2	Ankyrin repeat
`XP_057776331.1`	Pfam	`PF13637`	Ank_4	Repeat	114	164	1.3e-40	137.2	Ankyrin repeats (many copies)
`XP_057776331.1`	Pfam	`PF12796`	Ank_2	Repeat	114	199	1.3e-52	177.0	Ankyrin repeats (3 copies)
`XP_057776331.1`	Pfam	`PF13637`	Ank_4	Repeat	148	194	1.3e-40	137.2	Ankyrin repeats (many copies)
`XP_057776331.1`	Pfam	`PF12796`	Ank_2	Repeat	198	275	1.3e-52	177.0	Ankyrin repeats (3 copies)
`XP_057776331.1`	Pfam	`PF13637`	Ank_4	Repeat	226	274	1.3e-40	137.2	Ankyrin repeats (many copies)
`XP_057776331.1`	Pfam	`PF00023`	Ank	Repeat	256	274	6.1e-41	136.8	Ankyrin repeat
`XP_057776331.1`	Pfam	`PF12796`	Ank_2	Repeat	287	346	1.3e-52	177.0	Ankyrin repeats (3 copies)
`XP_057776331.1`	Pfam	`PF00023`	Ank	Repeat	289	309	6.1e-41	136.8	Ankyrin repeat
`XP_057776331.1`	Pfam	`PF00023`	Ank	Repeat	322	346	6.1e-41	136.8	Ankyrin repeat
`XP_057776331.1`	Pfam	`PF13637`	Ank_4	Repeat	326	375	1.3e-40	137.2	Ankyrin repeats (many copies)
`XP_057776331.1`	Pfam	`PF00023`	Ank	Repeat	355	376	6.1e-41	136.8	Ankyrin repeat
`XP_057776331.1`	Pfam	`PF13606`	Ank_3	Repeat	355	378	2.2e-39	129.2	Ankyrin repeat
`XP_057776331.1`	Pfam	`PF13962`	PGG	Domain	427	531	6.7e-17	62.1	Domain of unknown function

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057920348.1
GCAAAAAAAAATAAAAAAATAAAAAAAATAAGTAGAACCTTATCATGCGAGGTCCTTATATATTGCCAGAGTAGTTGGGTCTGTGTGTGTGAAAATAAAAATAACAAAAGGAGAAAACAGAGAAAAAAAGATAGAAAGGCATTAATAATGAGTGGTGAAGGAAGAATGGCTGCAGAACTCTACGATGCTGTGTCAAAGGGGGATGTAAGAAAATTTCGAGAAGTGGTTCAACAAGATCCATATCTTGTTGAAACTGCCTC...

CDS

1 records

下载 CDS FASTA

LOC130995193
ATGAGTGGTGAAGGAAGAATGGCTGCAGAACTCTACGATGCTGTGTCAAAGGGGGATGTAAGAAAATTTCGAGAAGTGGTTCAACAAGATCCATATCTTGTTGAAACTGCCTCATTTGCATGTTCAAGAAATGTTCTACACATAGCAATACTGTGGAAGCGAGTAGCCATTGTTGAAGAGGTGTTGAAAATCAACCCGCAGCTAGCTCGAGATTTGGACTCCCAACAATCATCGGCTCTTCACATTGCAGTTGCGAAAGG...

Protein

1 records

下载 Protein FASTA

XP_057776331.1
MSGEGRMAAELYDAVSKGDVRKFREVVQQDPYLVETASFACSRNVLHIAILWKRVAIVEEVLKINPQLARDLDSQQSSALHIAVAKGSLEIVKKLLSVAPEACWWRDCHDMNPIHIAAMNGHDEVLKMLLNESHIPAMERLHRGQTVLHLCVKHGKLTTLKVLVEKLGELVYAKDDNGETFLDLAVRCNQDEMVQHVVAMENNNVKVLVDLVDEVSYARSRNLLQIAILRGHVDMVEGLLNTNPQLARDLDSQQSSPLHI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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