Red Sage Omics 丹参基因组信息平台
首页 基因查询 ID 对照表 功能注释 结构域预测 Pfam 基因组工具 蛋白互作 亚细胞定位 表达量 共表达 同源/共线性 GO/KEGG 注释 TF 结合位点 TF 靶基因 EMS 突变 JBrowse BLAST 下载 关于 帮助
数据资源
ID 对照表 功能注释 功能检索 次生代谢专题 文献证据 结构域预测 Pfam 同源/共线性
分析工具
基因组工具 引物设计 同源重组引物设计 核酸翻译 BLAST 蛋白互作 亚细胞定位 共表达 GO/KEGG 注释 功能检索
调控/突变
TF 结合位点 TF 靶基因 EMS 突变
帮助
关于 帮助 资源与版本
中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G004636

染色体: Chr07 坐标: 59210852-59219615 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G004636
名称SmilChr07G004636
描述ankyrin repeat-containing protein ITN1-like
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向59210852 - 59219615 / -

ID 对照

NCBI Gene IDLOC130995192
GeneID130995192
locus_tag-
NCBI NameLOC130995192
原始查询SmilChr07G004636

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述ankyrin repeat-containing protein ITN1-like
产物ankyrin repeat-containing protein ITN1-like
ArabidopsisAT3G12360 (ITN1)
Ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:820414]
identity=29.1; qcov=0.474; evalue=6.12e-16; confidence=low
RiceOs09g0334900
-
identity=28.3; qcov=0.538; evalue=2.07e-15; confidence=low
GOGO:0005886 (plasma membrane); GO:0008157 (protein phosphatase 1 binding); GO:0019888 (protein phosphatase regulator activity); GO:0035304 (GO:0035304)
KEGG-
PfamPF00023 (Ank); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4); PF13962 (PGG)
InterPro-
eggNOG-
NRGeneID:130995192

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057776329.1
2 Cytosol 细胞质基质 0.80000 XP_057776330.1
3 Cytoplasm 细胞质 0.60000 XP_057776330.1
4 Endoplasmic reticulum 内质网 0.20000 XP_057776329.1
5 Nucleus 细胞核 0.00000 XP_057776329.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:59210996 G GA 1bp_insertion frameshift_variant 1 D4
Chr7:59210996 G GA 1bp_insertion CDS_variant 1 D4
Chr7:59211024 A AT 1bp_insertion frameshift_variant 58 A18,A20,A21,A25,A4,A8,B10,B101,B11,B12,B130,B131,B132,B134,B15,B18,B19,B2,B21,B24,B37,B41,B46,B50,B51,B54,B55,B59,B6,B61,B64,B69,B71,B82,B9,B97,B98,C11,C16,C22,C30,C33,C34,C47,C48,C51,C53,C62,C67,C69,C70,C71,C74,C75,C77,D1,D2,D3
Chr7:59211031 C T EMS_canonical_SNV CDS_variant 2 C17,D11
Chr7:59211035 GA G 1bp_deletion frameshift_variant 23 A15,A20,A21,A7,B131,B140,B21,B26,B45,B61,B67,B75,B76,B82,B91,B93,C24,C25,C26,C4,C44,C45,C59
Chr7:59211041 A AT 1bp_insertion frameshift_variant 1 B82
Chr7:59211041 A AT 1bp_insertion CDS_variant 1 B82
Chr7:59211050 G GA 1bp_insertion frameshift_variant 3 B101,B131,B41
Chr7:59211050 G GA 1bp_insertion CDS_variant 3 B101,B131,B41
Chr7:59211089 C CAG 2bp_insertion frameshift_variant 84 A10,A13,A16,A20,A22,A24,A25,A3,A5,A7,B1,B104,B106,B108,B110,B122,B123,B126,B127,B13,B136,B138,B139,B17,B2,B20,B23,B24,B25,B29,B3,B31,B32,B33,B34,B39,B42,B43,B45,B53,B56,B58,B61,B62,B68,B7,B74,B79,B83,B86,B89,B9,B96,B97,C14,C16,C18,C19,C21,C24,C3,C30,C37,C40,C42,C46,C47,C48,C5,C50,C54,C55,C56,C58,C61,C66,C73,C78,C8,C83,C85,C86,D1,D4
Chr7:59211090 TTC T 2bp_deletion frameshift_variant 118 A1,A10,A13,A15,A16,A19,A20,A22,A24,A25,A3,A5,A6,A7,B1,B101,B103,B104,B106,B108,B110,B117,B118,B121,B122,B123,B125,B126,B127,B13,B131,B133,B136,B138,B139,B17,B2,B20,B21,B23,B24,B25,B26,B29,B3,B31,B32,B33,B34,B35,B39,B42,B43,B45,B53,B56,B58,B61,B62,B67,B68,B7,B74,B75,B79,B8,B83,B86,B89,B9,B93,B94,B95,B96,B97,C1,C14,C16,C18,C19,C2,C20,C21,C24,C29,C3,C30,C37,C39,C4,C40,C41,C42,C44,C45,C46,C47,C48,C5,C50,C54,C55,C56,C58,C59,C61,C64,C66,C72,C73,C76,C78,C8,C83,C85,C86,D1,D4
Chr7:59211094 T TA 1bp_insertion frameshift_variant 4 B128,C14,C25,C73

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776329.1
582 aa
N
1
291
582
Ank_2
Ank_2
Ank
Ank
Ank_3
Ank_4
Ank_2
Ank_4
Ank_2
Ank
Ank
Ank_4
PGG
C
PF12796 Ank_2 12-97 aa PF12796 Ank_2 46-133 aa PF00023 Ank 78-96 aa PF00023 Ank 111-131 aa PF13606 Ank_3 111-132 aa PF13637 Ank_4 114-164 aa PF12796 Ank_2 114-200 aa PF13637 Ank_4 148-195 aa PF12796 Ank_2 269-350 aa PF00023 Ank 293-313 aa PF00023 Ank 326-350 aa PF13637 Ank_4 330-379 aa PF13962 PGG 430-536 aa
XP_057776330.1
420 aa
N
1
210
420
Ank_2
Ank_2
Ank
Ank
Ank_3
Ank_4
Ank_2
Ank_4
Ank_2
Ank
Ank_3
Ank_2
Ank
Ank_4
C
PF12796 Ank_2 12-97 aa PF12796 Ank_2 46-133 aa PF00023 Ank 78-96 aa PF00023 Ank 111-131 aa PF13606 Ank_3 111-132 aa PF13637 Ank_4 114-164 aa PF12796 Ank_2 114-200 aa PF13637 Ank_4 148-195 aa PF12796 Ank_2 269-350 aa PF00023 Ank 293-313 aa PF13606 Ank_3 293-313 aa PF12796 Ank_2 296-374 aa PF00023 Ank 326-350 aa PF13637 Ank_4 330-374 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057776329.1 Pfam PF12796 Ank_2 Repeat 12 97 1.5e-46 157.6 Ankyrin repeats (3 copies)
XP_057776329.1 Pfam PF12796 Ank_2 Repeat 46 133 1.5e-46 157.6 Ankyrin repeats (3 copies)
XP_057776329.1 Pfam PF00023 Ank Repeat 78 96 5.8e-36 121.2 Ankyrin repeat
XP_057776329.1 Pfam PF00023 Ank Repeat 111 131 5.8e-36 121.2 Ankyrin repeat
XP_057776329.1 Pfam PF13606 Ank_3 Repeat 111 132 1.3e-32 108.5 Ankyrin repeat
XP_057776329.1 Pfam PF13637 Ank_4 Repeat 114 164 1.4e-30 105.3 Ankyrin repeats (many copies)
XP_057776329.1 Pfam PF12796 Ank_2 Repeat 114 200 1.5e-46 157.6 Ankyrin repeats (3 copies)
XP_057776329.1 Pfam PF13637 Ank_4 Repeat 148 195 1.4e-30 105.3 Ankyrin repeats (many copies)
XP_057776329.1 Pfam PF12796 Ank_2 Repeat 269 350 1.5e-46 157.6 Ankyrin repeats (3 copies)
XP_057776329.1 Pfam PF00023 Ank Repeat 293 313 5.8e-36 121.2 Ankyrin repeat
XP_057776329.1 Pfam PF00023 Ank Repeat 326 350 5.8e-36 121.2 Ankyrin repeat
XP_057776329.1 Pfam PF13637 Ank_4 Repeat 330 379 1.4e-30 105.3 Ankyrin repeats (many copies)
XP_057776329.1 Pfam PF13962 PGG Domain 430 536 2.3e-18 66.8 Domain of unknown function
XP_057776330.1 Pfam PF12796 Ank_2 Repeat 12 97 1.5e-55 186.5 Ankyrin repeats (3 copies)
XP_057776330.1 Pfam PF12796 Ank_2 Repeat 46 133 1.5e-55 186.5 Ankyrin repeats (3 copies)
XP_057776330.1 Pfam PF00023 Ank Repeat 78 96 3.4e-34 115.7 Ankyrin repeat
XP_057776330.1 Pfam PF00023 Ank Repeat 111 131 3.4e-34 115.7 Ankyrin repeat
XP_057776330.1 Pfam PF13606 Ank_3 Repeat 111 132 1.7e-31 105.0 Ankyrin repeat
XP_057776330.1 Pfam PF13637 Ank_4 Repeat 114 164 1.5e-29 102.0 Ankyrin repeats (many copies)
XP_057776330.1 Pfam PF12796 Ank_2 Repeat 114 200 1.5e-55 186.5 Ankyrin repeats (3 copies)
XP_057776330.1 Pfam PF13637 Ank_4 Repeat 148 195 1.5e-29 102.0 Ankyrin repeats (many copies)
XP_057776330.1 Pfam PF12796 Ank_2 Repeat 269 350 1.5e-55 186.5 Ankyrin repeats (3 copies)
XP_057776330.1 Pfam PF00023 Ank Repeat 293 313 3.4e-34 115.7 Ankyrin repeat
XP_057776330.1 Pfam PF13606 Ank_3 Repeat 293 313 1.7e-31 105.0 Ankyrin repeat
XP_057776330.1 Pfam PF12796 Ank_2 Repeat 296 374 1.5e-55 186.5 Ankyrin repeats (3 copies)
XP_057776330.1 Pfam PF00023 Ank Repeat 326 350 3.4e-34 115.7 Ankyrin repeat
XP_057776330.1 Pfam PF13637 Ank_4 Repeat 330 374 1.5e-29 102.0 Ankyrin repeats (many copies)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057920346.1
GGTCTGTGTGTGTGAAAATAAAAATAACAAAAGGAGAAAACAGAGAAAAAAAGATAGAAAGGCATTAATTAATAATGAGTGGTGAAGGAAGAATGGCTGCAGAACTCTACGATGCTGTGTCAAAGGGGGATGTAAGAAAATTTCGAGAAGTGGTTCAACAAGATCCATATCTTGTTGAAACTGCCTCATTTACATGTTCAAGAAATGTTCTACACATAGCAACACTGCGGGGAAAGGCAGCCATCGTGGAAGAGGTGTTG...
XM_057920347.1
GGTCTGTGTGTGTGAAAATAAAAATAACAAAAGGAGAAAACAGAGAAAAAAAGATAGAAAGGCATTAATTAATAATGAGTGGTGAAGGAAGAATGGCTGCAGAACTCTACGATGCTGTGTCAAAGGGGGATGTAAGAAAATTTCGAGAAGTGGTTCAACAAGATCCATATCTTGTTGAAACTGCCTCATTTACATGTTCAAGAAATGTTCTACACATAGCAACACTGCGGGGAAAGGCAGCCATCGTGGAAGAGGTGTTG...

CDS

2 records

下载 CDS FASTA
LOC130995192
ATGAGTGGTGAAGGAAGAATGGCTGCAGAACTCTACGATGCTGTGTCAAAGGGGGATGTAAGAAAATTTCGAGAAGTGGTTCAACAAGATCCATATCTTGTTGAAACTGCCTCATTTACATGTTCAAGAAATGTTCTACACATAGCAACACTGCGGGGAAAGGCAGCCATCGTGGAAGAGGTGTTGAACATCAACCCGCAGCTAGCTCGAGATTTGGACTCCCAACAATCATCGCCTCTTCACATTGCAGCAGCACAAGG...
LOC130995192
ATGAGTGGTGAAGGAAGAATGGCTGCAGAACTCTACGATGCTGTGTCAAAGGGGGATGTAAGAAAATTTCGAGAAGTGGTTCAACAAGATCCATATCTTGTTGAAACTGCCTCATTTACATGTTCAAGAAATGTTCTACACATAGCAACACTGCGGGGAAAGGCAGCCATCGTGGAAGAGGTGTTGAACATCAACCCGCAGCTAGCTCGAGATTTGGACTCCCAACAATCATCGCCTCTTCACATTGCAGCAGCACAAGG...

Protein

2 records

下载 Protein FASTA
XP_057776329.1
MSGEGRMAAELYDAVSKGDVRKFREVVQQDPYLVETASFTCSRNVLHIATLRGKAAIVEEVLNINPQLARDLDSQQSSPLHIAAAQGNIVIVRKLLSVAREACWWRDCHDMNPIHIAAMNGHDEVLKMLLNESHIPAMERLHRGQTVLHLCVKHGKLTTLKVLVEKLGELVYAKDDNGETFLDLAVRCNQDEMVQHLVAMENNNIKVLVDLVDEVSYARSRNFLQIAILRGHEAMVEGLLNTNPHLARDLNSQQSSPLHI...
XP_057776330.1
MSGEGRMAAELYDAVSKGDVRKFREVVQQDPYLVETASFTCSRNVLHIATLRGKAAIVEEVLNINPQLARDLDSQQSSPLHIAAAQGNIVIVRKLLSVAREACWWRDCHDMNPIHIAAMNGHDEVLKMLLNESHIPAMERLHRGQTVLHLCVKHGKLTTLKVLVEKLGELVYAKDDNGETFLDLAVRCNQDEMVQHLVAMENNNIKVLVDLVDEVSYARSRNFLQIAILRGHEAMVEGLLNTNPHLARDLNSQQSSPLHI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器