当前解析结果
SmilChr07G004648| 统一新 Gene ID | SmilChr07G004648 |
|---|---|
| 名称 | SmilChr07G004648 |
| 描述 | uncharacterized SmilChr07G004648 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 59311036 - 59312319 / - |
| NCBI Gene ID | LOC130994533 |
|---|---|
| GeneID | 130994533 |
| locus_tag | - |
| NCBI Name | LOC130994533 |
| 原始查询 | SmilChr07G004648 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | zinc ion binding / nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814629]; symbol=AT2G01050; hit=AT2G01050; species=arabidopsis; confidence=low |
| 产物 | zinc ion binding / nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814629]; symbol=AT2G01050; hit=AT2G01050; species=arabidopsis; confidence=low |
| Arabidopsis | AT2G01050 (AT2G01050)zinc ion binding / nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814629] identity=31.8; qcov=0.419; evalue=4.48e-26; confidence=low |
| Rice | -- |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994533 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057775561.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057775561.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057775561.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057775561.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057775561.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:59311134 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B107,C71 |
Chr7:59311162 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B107 |
Chr7:59311179 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B120,B131,B35 |
Chr7:59311245 |
CAT |
C |
2bp_deletion | frameshift_variant | 26 | A3,A9,B107,B113,B128,B131,B135,B17,B41,B5,B58,B59,B73,B77,B82,B85,C17,C19,C20,C21,C29,C35,C41,C67,C83,D3 |
Chr7:59311251 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B17,B55,C82 |
Chr7:59311319 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A9,B126,B82 |
Chr7:59311329 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B93 |
Chr7:59311341 |
G |
A |
EMS_canonical_SNV | stop_gained | 26 | A10,A14,A2,A5,A6,A9,B123,B126,B139,B14,B30,B34,B35,B55,B56,B70,B73,B85,B94,B96,C16,C23,C24,C54,C61,C82 |
Chr7:59311374 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B107,B26,B82 |
Chr7:59311385 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B139 |
Chr7:59311410 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B14,B94,C34,C40 |
Chr7:59311476 |
CCG |
C |
2bp_deletion | frameshift_variant | 57 | A22,A3,A7,A8,B100,B101,B102,B105,B108,B109,B110,B114,B117,B123,B129,B130,B131,B138,B139,B30,B33,B44,B47,B49,B58,B61,B62,B69,B71,B76,B77,B85,B86,B87,B91,C10,C16,C17,C18,C25,C28,C3,C34,C4,C51,C57,C62,C68,C70,C72,C73,C75,C76,C85,D10,D3,D6 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。