Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004658`

染色体: Chr07 坐标: 59497297-59502957 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004658`
名称	SmilChr07G004658
描述	uncharacterized SmilChr07G004658
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	59497297 - 59502957 / `-`

ID 对照

NCBI Gene ID	`LOC130995229`
GeneID	`130995229`
locus_tag	`-`
NCBI Name	`LOC130995229`
原始查询	`SmilChr07G004658`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829455]; symbol=AT4G33180; hit=AT4G33180; species=arabidopsis; confidence=high
产物	alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829455]; symbol=AT4G33180; hit=AT4G33180; species=arabidopsis; confidence=high
Arabidopsis	`AT4G33180` (AT4G33180) alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829455] identity=47; qcov=1.13; evalue=5.65e-92; confidence=high
Rice	`Os07g0612400` - identity=42.4; qcov=1.14; evalue=1.18e-61; confidence=medium
GO	-
KEGG	-
Pfam	PF00561 (Abhydrolase_1); PF12146 (Hydrolase_4); PF12697 (Abhydrolase_6)
InterPro	-
eggNOG	-
NR	GeneID:130995229

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057776405.1`
2	Nucleus	细胞核	0.00000	`XP_057776405.1`
3	Chromosome	染色体	0.00000	`XP_057776405.1`
4	Centromere	着丝粒	0.00000	`XP_057776405.1`
5	Chromatin	染色质	0.00000	`XP_057776405.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:59497645`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B68,C1
`Chr7:59501991`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C76,C85,C9
`Chr7:59502160`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B68,C1
`Chr7:59502175`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A7,B3
`Chr7:59502213`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	C30
`Chr7:59502213`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C30
`Chr7:59502228`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B12,B5,B6,B86,C15
`Chr7:59502230`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B12,B5,B6,B86,C15
`Chr7:59502241`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A6,B1,B108,B68,C8
`Chr7:59502249`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B12,B6,B86,C15
`Chr7:59502522`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B104,D10
`Chr7:59502669`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C50

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776405.1

298 aa

149

298

Abhydrolase_1

Hydrolase_4

Abhydrolase_6

PF00561 Abhydrolase_1 49-282 aa PF12146 Hydrolase_4 50-278 aa PF12697 Abhydrolase_6 51-286 aa

XP_057776407.1

266 aa

133

266

Abhydrolase_1

Hydrolase_4

Abhydrolase_6

PF00561 Abhydrolase_1 49-189 aa PF12146 Hydrolase_4 50-170 aa PF12697 Abhydrolase_6 51-254 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776405.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	49	282	1.7e-28	100.7	alpha/beta hydrolase fold
`XP_057776405.1`	Pfam	`PF12146`	Hydrolase_4	Domain	50	278	1.2e-08	35.3	Serine aminopeptidase, S33
`XP_057776405.1`	Pfam	`PF12697`	Abhydrolase_6	Domain	51	286	1.2e-17	66.0	Alpha/beta hydrolase family
`XP_057776407.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	49	189	2.5e-26	93.6	alpha/beta hydrolase fold
`XP_057776407.1`	Pfam	`PF12146`	Hydrolase_4	Domain	50	170	1.2e-08	35.3	Serine aminopeptidase, S33
`XP_057776407.1`	Pfam	`PF12697`	Abhydrolase_6	Domain	51	254	4.4e-16	60.9	Alpha/beta hydrolase family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057920422.1
AAAACATATTGCATGAAATGTATATGCTAAATTTTTGTTAACCAACTTTTAGATAGACATAATTAAAGGAAAAATAATTAAAGAAAAAAAACTTGTAATTTGTAAAGGGTAAAGGAGTGGAACTACGAATCTTGCTCTGGCAATAGCAACCGCCATGATACAATAATACAAACGCTGGATTTCCTTCAGCTGATACTATCACCCGCATTTAAACAGCATGGCTGCCTTCTGTCTCAGCTTCGTCTCAATCTACGGCAGCT...

XM_057920424.1
AAAAATAATTAAAGAAAAAAAACTTGTAATTTGTAAAGGGTAAAGGAGTGGAACTACGAATCTTGCTCTGGCAATAGCAACCGCCATGATACAATAATACAAACGCTGGATTTCCTTCAGCTGATACTATCACCCGCATTTAAACAGCATGGCTGCCTTCTGTCTCAGCTTCGTCTCAATCTACGGCAGCTTCCTCCGCCGCTGTCTCGCCGCCGCCGGCCTCTCCTCTCAAAGCGTAGACATAGACAGCGCCACCACCA...

CDS

2 records

下载 CDS FASTA

LOC130995229
ATGGCTGCCTTCTGTCTCAGCTTCGTCTCAATCTACGGCAGCTTCCTCCGCCGCTGTCTCGCCGCCGCCGGCCTCTCCTCTCAAAGCGTAGACATAGACAGCGCCACCACCATCAGCTTTTGGGGCCCCGCCGCCTCCACCAAACCTCCGCTGGTCCTGATCCACGGCTTCGGACCTCACGGCGTCTGGCAATGGCGACCTCAGATCTCCTTCTTCTCCCGCCAATTCAGCGTCTACGTGCCCGATCTACTCTTTTTCGG...

Protein

2 records

下载 Protein FASTA

XP_057776405.1
MAAFCLSFVSIYGSFLRRCLAAAGLSSQSVDIDSATTISFWGPAASTKPPLVLIHGFGPHGVWQWRPQISFFSRQFSVYVPDLLFFGGSSTESADRSEIFQAASVAKLMEKLGISRYSVVGTSYGGLVAYRMAAMWPERVEKVVIASSAANMRRRDHVELLKRAKLEKVEDLLLPSSASQLRKLFGLSVFRRLLMPDFILNDFIDKLYSDNRKEKLELLKGLTLGQDDTGTICPLSQKVLIVWGEHDKIFLLEKAVELEK...

XP_057776407.1
MAAFCLSFVSIYGSFLRRCLAAAGLSSQSVDIDSATTISFWGPAASTKPPLVLIHGFGPHGVWQWRPQISFFSRQFSVYVPDLLFFGGSSTESADRSEIFQAASVAKLMEKLGISRYSVVGTSYGGLVAYRMAAMWPERVEKVVIASSAANMRRRDHVELLKRAKLEKVEDLLLPSSASQLRKLFGLSVFRRLLMPDFILNDFIDKVLIVWGEHDKIFLLEKAVELEKLLGENARLQVIKNTSHVPQLEDSGQFNNIVNN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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