当前解析结果
SmilChr07G004664| 统一新 Gene ID | SmilChr07G004664 |
|---|---|
| 名称 | SmilChr07G004664 |
| 描述 | protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 59535344 - 59545921 / + |
| NCBI Gene ID | LOC130995235 |
|---|---|
| GeneID | 130995235 |
| locus_tag | - |
| NCBI Name | LOC130995235 |
| 原始查询 | SmilChr07G004664 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3 |
| 产物 | protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3 |
| Arabidopsis | AT5G11270 (OCP3)overexpressor of cationic peroxidase 3 [Source:NCBI gene (formerly Entrezgene);Acc:830997] identity=67.2; qcov=0.497; evalue=9.79e-73; confidence=medium |
| Rice | Os06g0601000- identity=46.1; qcov=0.928; evalue=7.01e-72; confidence=high |
| GO | GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0003677 (DNA binding); GO:0005634 (nucleus); GO:0006357 (regulation of transcription by RNA polymerase II) |
| KEGG | - |
| Pfam | PF00046 (Homeodomain) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995235 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057776421.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 0.60000 | XP_057776421.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057776421.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057776421.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057776421.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:59535534 |
C |
CAT |
2bp_insertion | frameshift_variant | 11 | B117,B130,B4,B50,B64,B65,B75,B80,B81,C51,C52 |
Chr7:59535536 |
CGG |
C |
2bp_deletion | frameshift_variant | 11 | B117,B130,B4,B50,B64,B65,B75,B80,B81,C51,C52 |
Chr7:59535555 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B124,B62,C32,C68 |
Chr7:59535593 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A4,B36,B65,B69,B97 |
Chr7:59536034 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B95 |
Chr7:59536285 |
GA |
G |
1bp_deletion | frameshift_variant | 4 | B129,B18,B87,C5 |
Chr7:59536285 |
GA |
G |
1bp_deletion | CDS_variant | 4 | B129,B18,B87,C5 |
Chr7:59536288 |
GAT |
G |
2bp_deletion | frameshift_variant | 4 | B129,B18,B87,C5 |
Chr7:59536288 |
GAT |
G |
2bp_deletion | CDS_variant | 4 | B129,B18,B87,C5 |
Chr7:59536307 |
A |
AGG |
2bp_insertion | frameshift_variant | 56 | A2,A23,A3,A5,B103,B106,B109,B11,B117,B130,B134,B135,B136,B138,B139,B140,B22,B23,B3,B31,B4,B44,B47,B50,B58,B61,B64,B65,B70,B75,B80,B81,B87,B89,C12,C17,C20,C21,C26,C27,C33,C34,C40,C41,C43,C49,C5,C51,C52,C56,C7,C83,C87,D1,D11,D3 |
Chr7:59536318 |
G |
GAC |
2bp_insertion | frameshift_variant | 124 | A1,A10,A11,A16,A18,A19,A21,A23,A24,A25,A7,A8,B1,B100,B102,B103,B104,B105,B109,B112,B113,B114,B115,B118,B119,B12,B122,B123,B126,B129,B131,B133,B135,B137,B140,B15,B16,B17,B18,B20,B23,B29,B3,B30,B33,B34,B35,B36,B37,B41,B45,B49,B53,B55,B56,B60,B62,B63,B64,B66,B67,B68,B71,B72,B79,B8,B80,B82,B85,B88,B89,B9,B91,B92,B93,B94,B96,B99,C10,C14,C18,C19,C20,C26,C29,C3,C31,C35,C36,C37,C44,C45,C46,C47,C48,C50,C51,C53,C54,C56,C57,C58,C59,C64,C65,C66,C71,C73,C76,C78,C79,C8,C80,C82,C85,C86,C9,D10,D2,D4,D5,D6,D7,D9 |
Chr7:59536333 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B122,B85 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057776421.1PF00046
Homeodomain 290-339 aa
XP_057776422.1PF00046
Homeodomain 290-339 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057776421.1 |
Pfam | PF00046 |
Homeodomain | Domain | 290 | 339 | 3e-08 | 34.1 | Homeodomain |
XP_057776422.1 |
Pfam | PF00046 |
Homeodomain | Domain | 290 | 339 | 3e-08 | 34.1 | Homeodomain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。