Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004665`

染色体: Chr07 坐标: 59563338-59566987 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004665`
名称	SmilChr07G004665
描述	dihydroorotase, mitochondrial-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	59563338 - 59566987 / `-`

ID 对照

NCBI Gene ID	`LOC130995236`
GeneID	`130995236`
locus_tag	`-`
NCBI Name	`LOC130995236`
原始查询	`SmilChr07G004665`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	dihydroorotase, mitochondrial-like
产物	dihydroorotase%2C mitochondrial-like
Arabidopsis	`AT4G22930` (PYR4) pyrimidin 4 [Source:NCBI gene (formerly Entrezgene);Acc:828392] identity=78.7; qcov=0.991; evalue=0; confidence=high
Rice	`Os01g0747500` (PYRC) - identity=76.7; qcov=0.991; evalue=0; confidence=high
GO	GO:0004151 (dihydroorotase activity); GO:0005737 (cytoplasm); GO:0006207 ('de novo' pyrimidine nucleobase biosynthetic process); GO:0006221 (pyrimidine nucleotide biosynthetic process); GO:0009507 (chloroplast)
KEGG	smil00240 (Pyrimidine metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage))
Pfam	PF01979 (Amidohydro_1)
InterPro	-
eggNOG	-
NR	GeneID:130995236

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057776423.1`
2	Cytosol	细胞质基质	1.00000	`XP_057776423.1`
3	Nucleus	细胞核	0.20000	`XP_057776424.1`
4	Chromosome	染色体	0.00000	`XP_057776423.1`
5	Centromere	着丝粒	0.00000	`XP_057776423.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:59563615`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B122,B14,C61
`Chr7:59563672`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B134,B21,C32,C68,D8
`Chr7:59563680`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B129,B18,B68,B87
`Chr7:59563697`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B137,B19,C8
`Chr7:59563713`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B1,B15,B25,C35,C8
`Chr7:59563742`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B88,D4
`Chr7:59564013`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B35,B83,B95,C45,C59
`Chr7:59564342`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B83,B95,C59
`Chr7:59565284`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B122,C61
`Chr7:59566261`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B28,B46,B56,B96,C58
`Chr7:59566267`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr7:59566411`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776423.1

389 aa

194

389

Amidohydro_1

PF01979 Amidohydro_1 53-354 aa

XP_057776424.1

346 aa

173

346

Amidohydro_1

PF01979 Amidohydro_1 10-311 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776423.1`	Pfam	`PF01979`	Amidohydro_1	Domain	53	354	7.8e-24	85.3	Amidohydrolase family
`XP_057776424.1`	Pfam	`PF01979`	Amidohydro_1	Domain	10	311	5.3e-24	85.8	Amidohydrolase family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057920440.1
GCCTCTCTTCTTCTCTTCCAACTTCCCTTTTTTCTACTCCTTACAAATTTGAATTCGAACAATTATCTCTCACTCTGAGCGAGTAATGCCTGAGATTGCTCCTGAATCATGGAGGAGTTGAGTGAAGTTCCTCTGCAACTACAAGCCGGCAGCTCTCCTTTCCCTTCTCTTTGGCCGAGCATCAATTCAACTTGTTCCTTCTGAAATTGATAGTAGAAAAAGGGCATTTAGAGCTGTTGTCTAGTTTGTAGGATGTTGAA...

XM_057920441.1
AACTTCCCTTTTTTCTACTCCTTACAAATTTGAATTCGAACAATTATCTCTCACTCTGAGCGAGTAATGCCTGAGATTGCTCCTGAATCATGGAGGAGTTGAGTGAAGTTCCTCTGCAACTACAAGCCGGCAGCTCTCCTTTCCCTTCTCTTTGGCCGAGCATCAATTCAACTTGTTCCTTCTGAAATTGGGAAGTGCTCTTGCTGTGCCTTCAGAGTTCTCTGTCAAGTTGTCATCTGCACTTGTGAGAGCTAGAAGAC...

CDS

2 records

下载 CDS FASTA

LOC130995236
ATGTTGAAGACATCCCTGGGTCCTTACAGAGGAAGTGCTCTTGCTGTGCCTTCAGAGTTCTCTGTCAAGTTGTCATCTGCACTTGTGAGAGCTAGAAGACCAATCCATCTAAAAACATTTGGGATAAAAATGGAGCTTTCGATCACACGACCTGATGACTGGCATCTCCATCTTCGTGATGGGGAGCTTCTTGAAGCAGTTGCCCCCCACAGTTCACAACACTTTGGAAGAGCCATAGTCATGCCGAATCTGAGACCTCC...

LOC130995236
ATGGAGCTTTCGATCACACGACCTGATGACTGGCATCTCCATCTTCGTGATGGGGAGCTTCTTGAAGCAGTTGCCCCCCACAGTTCACAACACTTTGGAAGAGCCATAGTCATGCCGAATCTGAGACCTCCAATCACCACCACTGCTGCAGCTATAGCCTACCGACAATCAATTTTGAATGCTCTGCCGAAAGACAGTGACTTCACTCCTTTGATGACACTTTATTTGACAGACACTACGAGCCCTAATGAGATTAAGTT...

Protein

2 records

下载 Protein FASTA

XP_057776423.1
MLKTSLGPYRGSALAVPSEFSVKLSSALVRARRPIHLKTFGIKMELSITRPDDWHLHLRDGELLEAVAPHSSQHFGRAIVMPNLRPPITTTAAAIAYRQSILNALPKDSDFTPLMTLYLTDTTSPNEIKLARESGVVYAVKLYPAGATTNSQDGVTDLFGKCLPVLEEMVQQNMPLLVHGEVTSPDVDVFDREKLFIDAVLSPLIQKLPGLKVVMEHITTKDAVDFVLSSDERFVAATVTPQHIVLNRNSLFQGGLQPHN...

XP_057776424.1
MELSITRPDDWHLHLRDGELLEAVAPHSSQHFGRAIVMPNLRPPITTTAAAIAYRQSILNALPKDSDFTPLMTLYLTDTTSPNEIKLARESGVVYAVKLYPAGATTNSQDGVTDLFGKCLPVLEEMVQQNMPLLVHGEVTSPDVDVFDREKLFIDAVLSPLIQKLPGLKVVMEHITTKDAVDFVLSSDERFVAATVTPQHIVLNRNSLFQGGLQPHNYCLPVLKREIHRQAIASAVTSGSKRFFLGTDSAPHDRRNKECP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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