Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004673`

染色体: Chr07 坐标: 59679671-59688699 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004673`
名称	SmilChr07G004673
描述	aspartate--tRNA ligase 1, cytoplasmic-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	59679671 - 59688699 / `+`

ID 对照

NCBI Gene ID	`LOC130995242`
GeneID	`130995242`
locus_tag	`-`
NCBI Name	`LOC130995242`
原始查询	`SmilChr07G004673`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	aspartate--tRNA ligase 1, cytoplasmic-like
产物	aspartate--tRNA ligase 1%2C cytoplasmic-like
Arabidopsis	`AT4G31180` (AT4G31180) Class II aminoacyl-tRNA and biotin synthetases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829246] identity=62.3; qcov=0.627; evalue=0; confidence=high
Rice	`Os02g0686400` - identity=65.4; qcov=0.586; evalue=0; confidence=medium
GO	GO:0003723 (RNA binding); GO:0004815 (aspartate-tRNA ligase activity); GO:0005524 (ATP binding); GO:0005737 (cytoplasm); GO:0005829 (cytosol); GO:0006422 (aspartyl-tRNA aminoacylation); GO:0017101 (aminoacyl-tRNA synthetase multienzyme complex)
KEGG	smil00970 (Aminoacyl-tRNA biosynthesis - Salvia miltiorrhiza (redroot sage))
Pfam	PF00152 (tRNA-synt_2)
InterPro	-
eggNOG	-
NR	GeneID:130995242

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057776435.1`
2	Cytoplasm	细胞质	0.80000	`XP_057776435.1`
3	Nucleus	细胞核	0.00000	`XP_057776435.1`
4	Chromosome	染色体	0.00000	`XP_057776435.1`
5	Centromere	着丝粒	0.00000	`XP_057776435.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:59682257`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B114
`Chr7:59682262`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A10,B108,B13,B33,B88
`Chr7:59682443`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B100
`Chr7:59682448`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B35,B44,C45
`Chr7:59682489`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B84
`Chr7:59682529`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B115,B137,B71
`Chr7:59682533`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C83
`Chr7:59682535`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C38,D11
`Chr7:59682620`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B40,C30,C62
`Chr7:59682627`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B105
`Chr7:59682636`	`C`	`T`	EMS_canonical_SNV	stop_gained	2	C77,D9
`Chr7:59682636`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C77,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776435.1

893 aa

446

893

tRNA-synt_2

PF00152 tRNA-synt_2 216-535 aa PF00152 tRNA-synt_2 568-887 aa

XP_057776436.1

893 aa

446

893

tRNA-synt_2

PF00152 tRNA-synt_2 216-535 aa PF00152 tRNA-synt_2 568-887 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776435.1`	Pfam	`PF00152`	tRNA-synt_2	Domain	216	535	1.9e-138	461.4	tRNA synthetases class II (D, K and N)
`XP_057776435.1`	Pfam	`PF00152`	tRNA-synt_2	Domain	568	887	1.9e-138	461.4	tRNA synthetases class II (D, K and N)
`XP_057776436.1`	Pfam	`PF00152`	tRNA-synt_2	Domain	216	535	1.9e-138	461.4	tRNA synthetases class II (D, K and N)
`XP_057776436.1`	Pfam	`PF00152`	tRNA-synt_2	Domain	568	887	1.9e-138	461.4	tRNA synthetases class II (D, K and N)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057920452.1
TCCTTAGGGTTGCACACTCAATTGGCGCCGCACTCTAATTAATCTGCGGCCTCTTCACCTCGAAATCAGCCGCAGCAGCTGCCGATGCCTCGCTTCCTCCGGTGTCGGCCCTCTGTAGCAGCTGCCGATGCCTAACGGTCTCTCTCTCTCTTTTCCGCTGGTCGACGTCGCCCCGTATCAGTGCAGTCCATCATTTCCTGCCTAGTCTTGGCCCATCGGTGTAGCAGCTGCCGACGATTAATAGCAGACAAAGATGTCGT...

XM_057920453.1
CTTCGTCTCTTCACTCTTTCTGCTTCTTCCTCAAATAACTCACCTTTTATCACTCGACACCTTCGTCTCTTCACTCTTTCTGCTTCTTCCTCAAATAACTCACCTTTTATCAACGTGTCAATTTGAAATCTCATTCGCCACTCGTATTCCATAGCCGACTTTGCTAGCCGCCCTTTGCGCGCTACACTGTCGCATTTTCAAGTTTTTGAAAGCCAGACAAAGATGTCGTCTGAACCCTCCCAGAACCCCGCTGCCGCCGA...

CDS

2 records

下载 CDS FASTA

LOC130995242
ATGTCGTCTGAACCCTCCCAGAACCCCGCTGCCGCCGAAGAGTCGGGCGAGAAGAAGCTCTCCAAGAAGGAGCTTGCCAAGCTGGAGCGCCTGCGCAAGCGCCAAGAAGCAGCCGCCGCCGCTGCCGCCACATCTGCTGCAGCCCTCACCCTCGAAGATGAGGACCCACTGGCGGTCAATTACGGCGAAATTCCGGCCAACGACCTACAATCGAAGGCAGTAACGGGGAGAAAATTGACGCAGGTCAAATATTTGACCGA...

Protein

2 records

下载 Protein FASTA

XP_057776435.1
MSSEPSQNPAAAEESGEKKLSKKELAKLERLRKRQEAAAAAAATSAAALTLEDEDPLAVNYGEIPANDLQSKAVTGRKLTQVKYLTDELKDKAVQIQGHAQAIRAVGKKMSFLVVREECFTVQCVLTVAQDLVSPQMVKFANSLSRESIVDIEGIVSVPSQPITGASQQVEIQVRKLYCVSKAVPILPFNIEDAARSEAEIEKALQAGEPLVRVNPDTRLNNRFFDLRTPANQGIFGVESEVENIFRQFMLSKGFCKIHT...

XP_057776436.1
MSSEPSQNPAAAEESGEKKLSKKELAKLERLRKRQEAAAAAAATSAAALTLEDEDPLAVNYGEIPANDLQSKAVTGRKLTQVKYLTDELKDKAVQIQGHAQAIRAVGKKMSFLVVREECFTVQCVLTVAQDLVSPQMVKFANSLSRESIVDIEGIVSVPSQPITGASQQVEIQVRKLYCVSKAVPILPFNIEDAARSEAEIEKALQAGEPLVRVNPDTRLNNRFFDLRTPANQGIFGVESEVENIFRQFMLSKGFCKIHT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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