Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004685`

染色体: Chr07 坐标: 59798099-59803008 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004685`
名称	SmilChr07G004685
描述	DEAD-box ATP-dependent RNA helicase 15-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	59798099 - 59803008 / `-`

ID 对照

NCBI Gene ID	`LOC130995253`
GeneID	`130995253`
locus_tag	`-`
NCBI Name	`LOC130995253`
原始查询	`SmilChr07G004685`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	DEAD-box ATP-dependent RNA helicase 15-like
产物	DEAD-box ATP-dependent RNA helicase 15-like
Arabidopsis	`AT5G11170` (UAP56a) DEAD/DEAH box RNA helicase family protein [Source:NCBI gene (formerly Entrezgene);Acc:830986] identity=93.9; qcov=1; evalue=0; confidence=high
Rice	`Os01g0549700` (AIP1) DEAD-box ATP-dependent RNA helicase 56-like [Source:NCBI gene (formerly Entrezgene);Acc:4326192] identity=88.8; qcov=1; evalue=0; confidence=high
GO	GO:0003723 (RNA binding); GO:0003724 (RNA helicase activity); GO:0005524 (ATP binding)
KEGG	smil03013 (Nucleocytoplasmic transport - Salvia miltiorrhiza (redroot sage)); smil03015 (mRNA surveillance pathway - Salvia miltiorrhiza (redroot sage)); smil03040 (Spliceosome - Salvia miltiorrhiza (redroot sage))
Pfam	PF00270 (DEAD); PF00271 (Helicase_C); PF04851 (ResIII)
InterPro	-
eggNOG	-
NR	GeneID:130995253

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057776451.1`
2	Nucleus	细胞核	0.80000	`XP_057776451.1`
3	Cytoplasmic granule	细胞质颗粒	0.20000	`XP_057776451.1`
4	Cytoplasmic ribonucleoprotein granule	Cytoplasmic ribonucleoprotein granule	0.20000	`XP_057776451.1`
5	Chromosome	染色体	0.00000	`XP_057776451.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:59799347`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B137
`Chr7:59799590`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A2,B88,C5
`Chr7:59801381`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B134,B44,B66,B76,B8
`Chr7:59802196`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A8,C32,C68,C70
`Chr7:59802666`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B100,B63,B83,C23
`Chr7:59802675`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A3,B111,B113,B52,C43

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776451.1

428 aa

214

428

DEAD

ResIII

Helicase_C

PF00270 DEAD 72-237 aa PF04851 ResIII 87-234 aa PF00271 Helicase_C 276-384 aa

XP_057776452.1

428 aa

214

428

DEAD

ResIII

Helicase_C

PF00270 DEAD 72-237 aa PF04851 ResIII 87-234 aa PF00271 Helicase_C 276-384 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776451.1`	Pfam	`PF00270`	DEAD	Domain	72	237	1.6e-40	139.3	DEAD/DEAH box helicase
`XP_057776451.1`	Pfam	`PF04851`	ResIII	Family	87	234	1.2e-07	32.5	Type III restriction enzyme, res subunit
`XP_057776451.1`	Pfam	`PF00271`	Helicase_C	Domain	276	384	7.1e-31	107.4	Helicase conserved C-terminal domain
`XP_057776452.1`	Pfam	`PF00270`	DEAD	Domain	72	237	1.6e-40	139.3	DEAD/DEAH box helicase
`XP_057776452.1`	Pfam	`PF04851`	ResIII	Family	87	234	1.2e-07	32.5	Type III restriction enzyme, res subunit
`XP_057776452.1`	Pfam	`PF00271`	Helicase_C	Domain	276	384	7.1e-31	107.4	Helicase conserved C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057920468.1
CCAGCATCAGTTGCAGAAATCTCTCGCTCTCTCTCTCTCATCTCTTAACCTTCTCTCTCTACTCTTCCACCGAGTAAAAACTTTTGCCCTACTTTTCCTAACGTTTTTGTCTGCAGAAATCCCCGAAACCCTAATTCTAACCCTCATCAGATCCAACAGGCAGGTGAAATGGGAGACACGAAAGAGAACGAAGCTTACGAAGAGGAACTCCTCGACTACGAGGAGGAAGACGAAAAAGCCCCCGATTCGGTCAACGCCAA...

XM_057920469.1
AGCATCAGTTGCAGAAATCTCTCGCTCTCTCTCTCTCATCTCTTAACCTTCTCTCTCTACTCTTCCACCGAGTAAAAACTTTTGCCCTACTTTTCCTAACGTTTTTGTCTGCAGAAATCCCCGAAACCCTAATTCTAACCCTCATCAGATCCAACAGCAGGCAGGTGAAATGGGAGACACGAAAGAGAACGAAGCTTACGAAGAGGAACTCCTCGACTACGAGGAGGAAGACGAAAAAGCCCCCGATTCGGTCAACGCCA...

CDS

2 records

下载 CDS FASTA

LOC130995253
ATGGGAGACACGAAAGAGAACGAAGCTTACGAAGAGGAACTCCTCGACTACGAGGAGGAAGACGAAAAAGCCCCCGATTCGGTCAACGCCAAAGTCAACGGAGAGTCCGTTAAGAAAGGCTATGTGGGGATCCACAGTTCAGGATTCAGAGACTTCCTCTTGAAGCCAGAGCTTTTGAGGGCTATTGTAGATTCAGGATTTGAACATCCTTCAGAAGTTCAACACGAGTGCATACCTCAAGCCATTTTGGGAATGGATGT...

Protein

2 records

下载 Protein FASTA

XP_057776451.1
MGDTKENEAYEEELLDYEEEDEKAPDSVNAKVNGESVKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALVLCHTRELAYQICHEFERFSTYLSDIKVAVFYGGVNVKIHKDLLKNECPHIVVGTPGRILGLARDKDLSLRNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLT...

XP_057776452.1
MGDTKENEAYEEELLDYEEEDEKAPDSVNAKVNGESVKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALVLCHTRELAYQICHEFERFSTYLSDIKVAVFYGGVNVKIHKDLLKNECPHIVVGTPGRILGLARDKDLSLRNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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