Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004689`

染色体: Chr07 坐标: 59825998-59829547 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004689`
名称	SmilChr07G004689
描述	EIN3-binding F-box protein 1-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	59825998 - 59829547 / `+`

ID 对照

NCBI Gene ID	`LOC130995256`
GeneID	`130995256`
locus_tag	`-`
NCBI Name	`LOC130995256`
原始查询	`SmilChr07G004689`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	EIN3-binding F-box protein 1-like
产物	EIN3-binding F-box protein 1-like
Arabidopsis	`AT2G25490` (EBF1) EIN3-binding F box protein 1 [Source:NCBI gene (formerly Entrezgene);Acc:817087] identity=53.9; qcov=1; evalue=0; confidence=high
Rice	`Os02g0200900` (OsFbox072) - identity=46.8; qcov=0.919; evalue=0; confidence=high
GO	GO:0005515 (protein binding); GO:0019005 (SCF ubiquitin ligase complex); GO:0031146 (SCF-dependent proteasomal ubiquitin-dependent protein catabolic process)
KEGG	smil04016 (MAPK signaling pathway - plant - Salvia miltiorrhiza (redroot sage)); smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00646 (F-box); PF12937 (F-box-like); PF13516 (LRR_6); PF25372 (LRR_FBXL15)
InterPro	-
eggNOG	-
NR	GeneID:130995256

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057776455.1`
2	Chromosome	染色体	0.00000	`XP_057776455.1`
3	Centromere	着丝粒	0.00000	`XP_057776455.1`
4	Chromatin	染色质	0.00000	`XP_057776455.1`
5	Telomere	端粒	0.00000	`XP_057776455.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:59826980`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B91
`Chr7:59826987`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C30
`Chr7:59826989`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B13,B2
`Chr7:59827024`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B115,B134,B56,B71,B96
`Chr7:59827310`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C49
`Chr7:59827439`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C55
`Chr7:59827561`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A6,C28,D7
`Chr7:59827630`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A14,A23,B109,B133,C5
`Chr7:59827771`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B33
`Chr7:59827838`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B115,B134,B56,B71,B96
`Chr7:59827988`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr7:59828014`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C37

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776455.1

663 aa

332

663

F-box-like

F-box

LRR_FBXL15

LRR_6

PF12937 F-box-like 62-98 aa PF00646 F-box 65-99 aa PF25372 LRR_FBXL15 189-413 aa PF25372 LRR_FBXL15 378-461 aa PF25372 LRR_FBXL15 497-649 aa PF13516 LRR_6 578-600 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776455.1`	Pfam	`PF12937`	F-box-like	Domain	62	98	7.9e-06	26.3	F-box-like
`XP_057776455.1`	Pfam	`PF00646`	F-box	Domain	65	99	5.9e-05	23.5	F-box domain
`XP_057776455.1`	Pfam	`PF25372`	LRR_FBXL15	Repeat	189	413	1.3e-32	113.6	F-box/LRR-repeat protein 15, leucine rich repeat domain
`XP_057776455.1`	Pfam	`PF25372`	LRR_FBXL15	Repeat	378	461	1.3e-32	113.6	F-box/LRR-repeat protein 15, leucine rich repeat domain
`XP_057776455.1`	Pfam	`PF25372`	LRR_FBXL15	Repeat	497	649	1.3e-32	113.6	F-box/LRR-repeat protein 15, leucine rich repeat domain
`XP_057776455.1`	Pfam	`PF13516`	LRR_6	Repeat	578	600	2.5e-12	46.5	Leucine Rich repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057920472.1
GGAAAAAGTTTGGTTCATTGCATCATTCCATGTAACCCTCTCTCTCTAGAAAAGGAAAGCCCAAATTTAATAAAGAGAGAGAGAAAATAGACCCCACCACTTGAAACAAAAGATATGCATATGATATAACAATACACACACTAGTATTACTTGTGCACATTTACACCCTCACTTTCTCTCTCTTGTTCCTCTTTTTGCCCTGTTCTACAGGGTTTCTTCCATGCTCTCCTTTCTTTGATTCTTTTTTTTTTTCTTCCTCT...

CDS

1 records

下载 CDS FASTA

LOC130995256
ATGTCAGAAGTCTTCGATTTCAGTGATGTTGGCGCTTTTCGCCCCGGTTTTCTCCCGAATCCGAAGGACTCGAGTCTGTTTTTGTCCCCTGCTAGCCTTGTGGATCTGTATGTTTTGCCTCGCAAAAGATCTCGTGTCTGCGCCCCATTTGTTGTCTCTCAGGAAGCAAAGCCAAAGCCATCGATTGAAGTTCTTCCTGATGAGTGCCTCTTCGAGGTTTTCAGACGTCTTCCTGGAGGCAAGCAGAGGAGTGCTTGTGC...

Protein

1 records

下载 Protein FASTA

XP_057776455.1
MSEVFDFSDVGAFRPGFLPNPKDSSLFLSPASLVDLYVLPRKRSRVCAPFVVSQEAKPKPSIEVLPDECLFEVFRRLPGGKQRSACACVSKRWLMLLSSITRDEICAPQVAQSAQLETQSKPQESDGSFEVKGKCEFDGVDGIRSDEEKSNGFLSRCLEGKKATDVRLASIAVGTASRGGLGKLSIRGSASTRGLTDLGLKAISRGSPSLRTVSLWNLSSISDEGLSDLANGCRSIEKIDFCNCPAITDKGLTAIAMNCP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器