Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004691`

染色体: Chr07 坐标: 59830771-59834998 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004691`
名称	SmilChr07G004691
描述	protein WVD2-like 5
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	59830771 - 59834998 / `-`

ID 对照

NCBI Gene ID	`LOC130995257`
GeneID	`130995257`
locus_tag	`-`
NCBI Name	`LOC130995257`
原始查询	`SmilChr07G004691`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein WVD2-like 5
产物	protein WVD2-like 5
Arabidopsis	`AT4G32330` (AT4G32330) TPX2 (targeting protein for Xklp2) protein family [Source:NCBI gene (formerly Entrezgene);Acc:829367] identity=47; qcov=0.808; evalue=8.29e-83; confidence=high
Rice	`Os06g0606800` (P0029C06.13-3) - identity=64.8; qcov=0.364; evalue=9.43e-69; confidence=low
GO	GO:0008017 (microtubule binding)
KEGG	-
Pfam	PF06886 (TPX2)
InterPro	-
eggNOG	-
NR	GeneID:130995257

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoskeleton	细胞骨架	1.00000	`XP_057776456.1`
2	Cytosol	细胞质基质	0.60000	`XP_057776456.1`
3	Nucleus	细胞核	0.20000	`XP_057776456.1`
4	Spindle	Spindle	0.20000	`XP_057776456.1`
5	Chromosome	染色体	0.00000	`XP_057776456.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:59831187`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A3,B111,B113,B52,C43
`Chr7:59831330`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B19
`Chr7:59831403`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B91
`Chr7:59831407`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B91
`Chr7:59831409`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B134,D11
`Chr7:59831416`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B91
`Chr7:59831537`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B19
`Chr7:59832354`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A6,C28,D7
`Chr7:59832556`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr7:59832864`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B101,B140
`Chr7:59832917`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr7:59833374`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B122,B134

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776456.1

454 aa

227

454

TPX2

PF06886 TPX2 233-308 aa

XP_057776457.1

454 aa

227

454

TPX2

PF06886 TPX2 233-308 aa

XP_057776458.1

454 aa

227

454

TPX2

PF06886 TPX2 233-308 aa

XP_057776459.1

454 aa

227

454

TPX2

PF06886 TPX2 233-308 aa

XP_057776460.1

454 aa

227

454

TPX2

PF06886 TPX2 233-308 aa

XP_057776461.1

454 aa

227

454

TPX2

PF06886 TPX2 233-308 aa

XP_057776462.1

453 aa

226

453

TPX2

PF06886 TPX2 232-307 aa

XP_057776463.1

454 aa

227

454

TPX2

PF06886 TPX2 233-308 aa

XP_057776465.1

453 aa

226

453

TPX2

PF06886 TPX2 232-307 aa

XP_057776466.1

453 aa

226

453

TPX2

PF06886 TPX2 232-307 aa

XP_057776467.1

453 aa

226

453

TPX2

PF06886 TPX2 232-307 aa

XP_057776468.1

453 aa

226

453

TPX2

PF06886 TPX2 232-307 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776456.1`	Pfam	`PF06886`	TPX2	Domain	233	308	6.1e-27	94.1	Targeting protein for Xklp2 (TPX2) domain
`XP_057776457.1`	Pfam	`PF06886`	TPX2	Domain	233	308	6.1e-27	94.1	Targeting protein for Xklp2 (TPX2) domain
`XP_057776458.1`	Pfam	`PF06886`	TPX2	Domain	233	308	6.1e-27	94.1	Targeting protein for Xklp2 (TPX2) domain
`XP_057776459.1`	Pfam	`PF06886`	TPX2	Domain	233	308	6.1e-27	94.1	Targeting protein for Xklp2 (TPX2) domain
`XP_057776460.1`	Pfam	`PF06886`	TPX2	Domain	233	308	6.1e-27	94.1	Targeting protein for Xklp2 (TPX2) domain
`XP_057776461.1`	Pfam	`PF06886`	TPX2	Domain	233	308	6.1e-27	94.1	Targeting protein for Xklp2 (TPX2) domain
`XP_057776462.1`	Pfam	`PF06886`	TPX2	Domain	232	307	6.1e-27	94.1	Targeting protein for Xklp2 (TPX2) domain
`XP_057776463.1`	Pfam	`PF06886`	TPX2	Domain	233	308	6.1e-27	94.1	Targeting protein for Xklp2 (TPX2) domain
`XP_057776465.1`	Pfam	`PF06886`	TPX2	Domain	232	307	6.1e-27	94.1	Targeting protein for Xklp2 (TPX2) domain
`XP_057776466.1`	Pfam	`PF06886`	TPX2	Domain	232	307	6.1e-27	94.1	Targeting protein for Xklp2 (TPX2) domain
`XP_057776467.1`	Pfam	`PF06886`	TPX2	Domain	232	307	6.1e-27	94.1	Targeting protein for Xklp2 (TPX2) domain
`XP_057776468.1`	Pfam	`PF06886`	TPX2	Domain	232	307	6.1e-27	94.1	Targeting protein for Xklp2 (TPX2) domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

12 records

下载 cDNA FASTA

XM_057920480.1
GTACCAAACCATCAGAAACAAACACAACTTTGCCTCTGTTTTTCATAGAGAGAGAGGAGAGAGAGGAGAGAGAGGACTTCAAATTCATTTTTCAATTGTGTGTGTGGAGAGAGAGAGAGAGAAGGGGCTTCCAAATTTTCAATTTCAAGAAGTACCAATATTAATAAAATAAAAAATATCACCCCTTCACCTCCGAAAGAAAAGAGGAGAAAATTAATTAAAAGAAAAAAAAAGAGGAGAGAGAGAGAGAGAGCACTCTA...

XM_057920476.1
GAGGAGAGAGAGGAGAGAGAGGACTTCAAATTCATTTTTCAATTGTGTGTGTGGAGAGAGAGAGAGAGAAGGGGCTTCCAAATTTTCAATTTCAAGAAGTACCAATATTAATAAAATAAAAAATATCACCCCTTCACCTCCGAAAGAAAAGAGGAGAAAATTAATTAAAAGAAAAAAAAAGAGGAGAGAGAGAGAGAGAGCACTCTAAAACTTCAAGATCATTTCAAAGTTCAGACAGGAAACCTGACCAGACAAGACCA...

CDS

12 records

下载 CDS FASTA

LOC130995257
ATGATGGCGTCTAACAGCGTTAATCCTGTGTGTGGGGTGGAGTTGGAGAATGGCCTTCACGAGCCACTCGTAACTTCCAATGGAGACTTGGGGATCGAAGAATTAAGTGTTAATCTTGAAGATGCTGTGAATCTGGAAGATCATTCTTTAGTCTCTGACAAAGAAATCATTCAAGAACCTGTTGTGCAACCGGATTGCAACTCGACAGTCACAGCTGAGGCGCTTGGAGTTAAAGAGTCTAGTGATTCTAAGAATTTGAA...

Protein

12 records

下载 Protein FASTA

XP_057776456.1
MMASNSVNPVCGVELENGLHEPLVTSNGDLGIEELSVNLEDAVNLEDHSLVSDKEIIQEPVVQPDCNSTVTAEALGVKESSDSKNLKPQKGTVKAKSGKSLSPKQVSLTGLSKSKDGKNVPKSSVASNGTISSESVRGKAPALKTKAKSFNERQASDSSKETNVQTVSKQQRHPDVTSSSTSEALPEDPMEETKPKVVKKVPPSKAEETSESSLPTSDDGKPRKLGTLPAYDFNFKCDERAEKRREFYTKLEEKIHAKEM...

XP_057776457.1
MMASNSVNPVCGVELENGLHEPLVTSNGDLGIEELSVNLEDAVNLEDHSLVSDKEIIQEPVVQPDCNSTVTAEALGVKESSDSKNLKPQKGTVKAKSGKSLSPKQVSLTGLSKSKDGKNVPKSSVASNGTISSESVRGKAPALKTKAKSFNERQASDSSKETNVQTVSKQQRHPDVTSSSTSEALPEDPMEETKPKVVKKVPPSKAEETSESSLPTSDDGKPRKLGTLPAYDFNFKCDERAEKRREFYTKLEEKIHAKEM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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