当前解析结果
SmilChr07G004692| 统一新 Gene ID | SmilChr07G004692 |
|---|---|
| 名称 | SmilChr07G004692 |
| 描述 | bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 59840097 - 59845234 / + |
| NCBI Gene ID | LOC130995260 |
|---|---|
| GeneID | 130995260 |
| locus_tag | - |
| NCBI Name | LOC130995260 |
| 原始查询 | SmilChr07G004692 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic |
| 产物 | bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase%2C chloroplastic |
| Arabidopsis | AT3G06350 (MEE32)dehydroquinate dehydratase, putative / shikimate dehydrogenase [Source:NCBI gene (formerly Entrezgene);Acc:819809] identity=65.5; qcov=1.01; evalue=0; confidence=high |
| Rice | Os01g0375200 (DHQDT/SDH)- identity=61.7; qcov=0.984; evalue=0; confidence=high |
| GO | GO:0003855 (3-dehydroquinate dehydratase activity); GO:0004764 (shikimate 3-dehydrogenase (NADP+) activity); GO:0009423 (chorismate biosynthetic process); GO:0019632 (shikimate metabolic process) |
| KEGG | smil00400 (Phenylalanine, tyrosine and tryptophan biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00999 (Biosynthesis of various plant secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01230 (Biosynthesis of amino acids - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01487 (DHquinase_I); PF01488 (Shikimate_DH); PF03807 (F420_oxidored); PF08501 (Shikimate_dh_N); PF18317 (SDH_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995260 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057776469.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057776469.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057776469.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057776469.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057776469.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:59841544 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B109,C60,D10 |
Chr7:59841689 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B57 |
Chr7:59842454 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B101,B140 |
Chr7:59842803 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A2,C49 |
Chr7:59842834 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A2 |
Chr7:59842918 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr7:59842934 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C80 |
Chr7:59842943 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A3,B46,C33 |
Chr7:59842966 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B1,B24,B38,C6,C8 |
Chr7:59844095 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A3,B13,B46,C33 |
Chr7:59844145 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B122,B134 |
Chr7:59844312 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B109,C60,D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057776469.1PF01487
DHquinase_I 23-252 aa
PF08501
Shikimate_dh_N 260-340 aa
PF01488
Shikimate_DH 370-448 aa
PF03807
F420_oxidored 383-431 aa
PF18317
SDH_C 497-524 aa
XP_057776470.1PF01487
DHquinase_I 23-247 aa
PF08501
Shikimate_dh_N 255-335 aa
PF01488
Shikimate_DH 365-443 aa
PF03807
F420_oxidored 378-426 aa
PF18317
SDH_C 492-519 aa
XP_057776471.1PF01487
DHquinase_I 14-238 aa
PF08501
Shikimate_dh_N 246-326 aa
PF01488
Shikimate_DH 356-434 aa
PF03807
F420_oxidored 369-417 aa
PF18317
SDH_C 483-510 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057776469.1 |
Pfam | PF01487 |
DHquinase_I | Domain | 23 | 252 | 2.5e-71 | 241.1 | Type I 3-dehydroquinase |
XP_057776469.1 |
Pfam | PF08501 |
Shikimate_dh_N | Domain | 260 | 340 | 7.3e-25 | 87.8 | Shikimate dehydrogenase substrate binding domain |
XP_057776469.1 |
Pfam | PF01488 |
Shikimate_DH | Family | 370 | 448 | 3.7e-09 | 37.5 | Shikimate / quinate 5-dehydrogenase |
XP_057776469.1 |
Pfam | PF03807 |
F420_oxidored | Family | 383 | 431 | 3.7e-05 | 25.0 | NADP oxidoreductase coenzyme F420-dependent |
XP_057776469.1 |
Pfam | PF18317 |
SDH_C | Domain | 497 | 524 | 2.9e-08 | 34.0 | Shikimate 5'-dehydrogenase C-terminal domain |
XP_057776470.1 |
Pfam | PF01487 |
DHquinase_I | Domain | 23 | 247 | 2.2e-71 | 241.3 | Type I 3-dehydroquinase |
XP_057776470.1 |
Pfam | PF08501 |
Shikimate_dh_N | Domain | 255 | 335 | 7.1e-25 | 87.8 | Shikimate dehydrogenase substrate binding domain |
XP_057776470.1 |
Pfam | PF01488 |
Shikimate_DH | Family | 365 | 443 | 3.5e-09 | 37.6 | Shikimate / quinate 5-dehydrogenase |
XP_057776470.1 |
Pfam | PF03807 |
F420_oxidored | Family | 378 | 426 | 4e-05 | 24.8 | NADP oxidoreductase coenzyme F420-dependent |
XP_057776470.1 |
Pfam | PF18317 |
SDH_C | Domain | 492 | 519 | 2.9e-08 | 34.0 | Shikimate 5'-dehydrogenase C-terminal domain |
XP_057776471.1 |
Pfam | PF01487 |
DHquinase_I | Domain | 14 | 238 | 2.1e-71 | 241.3 | Type I 3-dehydroquinase |
XP_057776471.1 |
Pfam | PF08501 |
Shikimate_dh_N | Domain | 246 | 326 | 8.4e-25 | 87.6 | Shikimate dehydrogenase substrate binding domain |
XP_057776471.1 |
Pfam | PF01488 |
Shikimate_DH | Family | 356 | 434 | 3.5e-09 | 37.6 | Shikimate / quinate 5-dehydrogenase |
XP_057776471.1 |
Pfam | PF03807 |
F420_oxidored | Family | 369 | 417 | 3.8e-05 | 24.9 | NADP oxidoreductase coenzyme F420-dependent |
XP_057776471.1 |
Pfam | PF18317 |
SDH_C | Domain | 483 | 510 | 2.8e-08 | 34.0 | Shikimate 5'-dehydrogenase C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。