当前解析结果
SmilChr07G004693| 统一新 Gene ID | SmilChr07G004693 |
|---|---|
| 名称 | SmilChr07G004693 |
| 描述 | G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 59846680 - 59850226 / - |
| NCBI Gene ID | LOC130995261 |
|---|---|
| GeneID | 130995261 |
| locus_tag | - |
| NCBI Name | LOC130995261 |
| 原始查询 | SmilChr07G004693 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 |
| 产物 | G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 |
| Arabidopsis | AT4G32300 (SD2-5)S-domain-2 5 [Source:NCBI gene (formerly Entrezgene);Acc:829365] identity=63.03; qcov=0.972; evalue=0.0; confidence=high |
| Rice | Os06g0494100 (Pi-d2)- identity=57.95; qcov=0.99; evalue=0.0; confidence=high |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF01453 (B_lectin); PF07714 (PK_Tyr_Ser-Thr); PF08276 (PAN_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995261 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:59846844 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | B91 |
Chr7:59846844 |
TG |
T |
1bp_deletion | CDS_variant | 1 | B91 |
Chr7:59846892 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B99,C18,C49 |
Chr7:59846913 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A6 |
Chr7:59847106 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A6,C28,C70,D11,D7 |
Chr7:59847183 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A2,B8,C70 |
Chr7:59847189 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A8,C46,D6 |
Chr7:59847405 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C23 |
Chr7:59847573 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A1,B87,B94,C51 |
Chr7:59847618 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B41 |
Chr7:59847626 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A14,D3 |
Chr7:59847749 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B110,B42,B43 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057776472.1PF01453
B_lectin 81-167 aa
PF08276
PAN_2 353-387 aa
PF07714
PK_Tyr_Ser-Thr 495-760 aa
PF00069
Pkinase 496-760 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057776472.1 |
Pfam | PF01453 |
B_lectin | Repeat | 81 | 167 | 3.4e-22 | 79.6 | D-mannose binding lectin |
XP_057776472.1 |
Pfam | PF08276 |
PAN_2 | Domain | 353 | 387 | 0.00028 | 21.6 | PAN-like domain |
XP_057776472.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 495 | 760 | 1.3e-41 | 143.4 | Protein tyrosine and serine/threonine kinase |
XP_057776472.1 |
Pfam | PF00069 |
Pkinase | Domain | 496 | 760 | 5.3e-48 | 164.4 | Protein kinase domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。