当前解析结果
SmilChr07G004711| 统一新 Gene ID | SmilChr07G004711 |
|---|---|
| 名称 | SmilChr07G004711 |
| 描述 | uncharacterized SmilChr07G004711 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 59969618 - 59979003 / + |
| NCBI Gene ID | LOC130995278 |
|---|---|
| GeneID | 130995278 |
| locus_tag | - |
| NCBI Name | LOC130995278 |
| 原始查询 | SmilChr07G004711 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | TRAF-like family protein [Source:NCBI gene (formerly Entrezgene);Acc:817070]; symbol=AT2G25320; hit=AT2G25320; species=arabidopsis; confidence=high |
| 产物 | TRAF-like family protein [Source:NCBI gene (formerly Entrezgene);Acc:817070]; symbol=AT2G25320; hit=AT2G25320; species=arabidopsis; confidence=high |
| Arabidopsis | AT2G25320 (AT2G25320)TRAF-like family protein [Source:NCBI gene (formerly Entrezgene);Acc:817070] identity=69.3; qcov=0.971; evalue=0; confidence=high |
| Rice | Os02g0613400- identity=64.5; qcov=0.175; evalue=1.03e-121; confidence=weak |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00917 (MATH); PF22486 (MATH_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995278 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.80000 | XP_057776494.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057776494.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057776494.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057776494.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057776494.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:59969923 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B89 |
Chr7:59969953 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B56,B96,C39 |
Chr7:59969959 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B114 |
Chr7:59970069 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A8 |
Chr7:59970070 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B122 |
Chr7:59970139 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B91 |
Chr7:59970337 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B97 |
Chr7:59970544 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C77 |
Chr7:59970802 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B68,C57 |
Chr7:59970811 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B91 |
Chr7:59970886 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B76 |
Chr7:59970951 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B80 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057776494.1PF22486
MATH_2 82-209 aa
PF00917
MATH 87-211 aa
PF22486
MATH_2 249-383 aa
PF22486
MATH_2 419-553 aa
PF00917
MATH 449-555 aa
PF22486
MATH_2 587-709 aa
PF00917
MATH 598-693 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057776494.1 |
Pfam | PF22486 |
MATH_2 | Domain | 82 | 209 | 9.7e-84 | 279.2 | MATH domain |
XP_057776494.1 |
Pfam | PF00917 |
MATH | Domain | 87 | 211 | 4.1e-26 | 92.2 | MATH domain |
XP_057776494.1 |
Pfam | PF22486 |
MATH_2 | Domain | 249 | 383 | 9.7e-84 | 279.2 | MATH domain |
XP_057776494.1 |
Pfam | PF22486 |
MATH_2 | Domain | 419 | 553 | 9.7e-84 | 279.2 | MATH domain |
XP_057776494.1 |
Pfam | PF00917 |
MATH | Domain | 449 | 555 | 4.1e-26 | 92.2 | MATH domain |
XP_057776494.1 |
Pfam | PF22486 |
MATH_2 | Domain | 587 | 709 | 9.7e-84 | 279.2 | MATH domain |
XP_057776494.1 |
Pfam | PF00917 |
MATH | Domain | 598 | 693 | 4.1e-26 | 92.2 | MATH domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。