Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004713`

染色体: Chr07 坐标: 59988757-59993625 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004713`
名称	SmilChr07G004713
描述	probable sucrose-phosphate synthase 1
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	59988757 - 59993625 / `-`

ID 对照

NCBI Gene ID	`LOC130995280`
GeneID	`130995280`
locus_tag	`-`
NCBI Name	`LOC130995280`
原始查询	`SmilChr07G004713`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable sucrose-phosphate synthase 1
产物	probable sucrose-phosphate synthase 1
Arabidopsis	`AT5G11110` (SPS2F) sucrose phosphate synthase 2F [Source:NCBI gene (formerly Entrezgene);Acc:830979] identity=67; qcov=1.02; evalue=0; confidence=high
Rice	`Os08g0301500` (OsSPS8) - identity=62.3; qcov=1.04; evalue=0; confidence=high
GO	GO:0005985 (sucrose metabolic process); GO:0016157 (sucrose synthase activity); GO:0046524 (sucrose-phosphate synthase activity)
KEGG	smil00500 (Starch and sucrose metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF00534 (Glycos_transf_1); PF00862 (GT-B_Sucrose_synth); PF05116 (S6PP); PF13692 (Glyco_trans_1_4)
InterPro	-
eggNOG	-
NR	GeneID:130995280

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057776496.1`
2	Cytosol	细胞质基质	0.40000	`XP_057776496.1`
3	Nucleus	细胞核	0.00000	`XP_057776496.1`
4	Chromosome	染色体	0.00000	`XP_057776496.1`
5	Centromere	着丝粒	0.00000	`XP_057776496.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:59989274`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A15,B31
`Chr7:59989352`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr7:59989459`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B121,B127,B86,C17
`Chr7:59989500`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B131
`Chr7:59989532`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr7:59989839`	`AC`	`A`	1bp_deletion	frameshift_variant	1	D11
`Chr7:59989839`	`AC`	`A`	1bp_deletion	CDS_variant	1	D11
`Chr7:59989927`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D4
`Chr7:59990248`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C43
`Chr7:59990269`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B73
`Chr7:59990440`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A8,B68,C35
`Chr7:59990533`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B108,B58

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776496.1

1032 aa

516

1032

GT-B_Sucrose_synth

Glycos_transf_1

Glyco_trans_1_4

S6PP

PF00862 GT-B_Sucrose_synth 153-395 aa PF00534 Glycos_transf_1 467-638 aa PF13692 Glyco_trans_1_4 471-628 aa PF05116 S6PP 752-962 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776496.1`	Pfam	`PF00862`	GT-B_Sucrose_synth	Domain	153	395	2.7e-11	43.6	Sucrose synthase first GT-B domain
`XP_057776496.1`	Pfam	`PF00534`	Glycos_transf_1	Domain	467	638	7.1e-23	81.7	Glycosyl transferases group 1
`XP_057776496.1`	Pfam	`PF13692`	Glyco_trans_1_4	Domain	471	628	3.3e-14	54.1	Glycosyl transferases group 1
`XP_057776496.1`	Pfam	`PF05116`	S6PP	Family	752	962	4.4e-10	40.3	Sucrose-6F-phosphate phosphohydrolase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057920513.1
CTCTCTATTCTAATCTATTCTCATCACTGCCATTTCCACACACACACACACACCATCTCTGCAAAGATGGCGGGAAACGACTGGATTAACAGCTACCTCGAGGCGATCCTCGACGTCGACACCGGGATCAACGATCAGAAATCATCTCTCCTGCTGCGCGAGCGCGGCCGCTTCAGCCCCGCCCAATACTTCGTCGAAGAGGTCATCACCGGCTTCAATGAGACCGATCTCCACCGCTCCTGGGTTCGCGCATCAGCAAT...

CDS

1 records

下载 CDS FASTA

LOC130995280
ATGGCGGGAAACGACTGGATTAACAGCTACCTCGAGGCGATCCTCGACGTCGACACCGGGATCAACGATCAGAAATCATCTCTCCTGCTGCGCGAGCGCGGCCGCTTCAGCCCCGCCCAATACTTCGTCGAAGAGGTCATCACCGGCTTCAATGAGACCGATCTCCACCGCTCCTGGGTTCGCGCATCAGCAATCCGGAATTCGGAGGAGAGGAATACGAGGTTGGAGAATATGTGTTGGAGGATTTGGACGTTGGCACG...

Protein

1 records

下载 Protein FASTA

XP_057776496.1
MAGNDWINSYLEAILDVDTGINDQKSSLLLRERGRFSPAQYFVEEVITGFNETDLHRSWVRASAIRNSEERNTRLENMCWRIWTLARKKRQIEGEEAQRKAKKRLEREKARKQAAADMSEDLSEGEKGDTVGEMQAHGDSARGRMSRVNSVDMMANLDKKLYLVLISLHGLIRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVMAPDVDWTYGEPTEMLNPLSPESQMDDEIGESGGAYIIRIPFGPK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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