Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004714`

染色体: Chr07 坐标: 59994844-59999415 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004714`
名称	SmilChr07G004714
描述	synaptotagmin-5-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	59994844 - 59999415 / `+`

ID 对照

NCBI Gene ID	`LOC130995281`
GeneID	`130995281`
locus_tag	`-`
NCBI Name	`LOC130995281`
原始查询	`SmilChr07G004714`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	synaptotagmin-5-like
产物	synaptotagmin-5-like
Arabidopsis	`AT1G05500` (NTMC2T2.1) Calcium-dependent lipid-binding (CaLB domain) family protein [Source:NCBI gene (formerly Entrezgene);Acc:837052] identity=65.7; qcov=1; evalue=0; confidence=high
Rice	`Os07g0409100` (OsNTMC2T4.1) - identity=37.3; qcov=0.62; evalue=2.97e-56; confidence=medium
GO	GO:0005783 (endoplasmic reticulum); GO:0008289 (lipid binding)
KEGG	-
Pfam	PF00168 (C2); PF17047 (SMP_LBD)
InterPro	-
eggNOG	-
NR	GeneID:130995281

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057776497.1`
2	Endosome	内体	0.40000	`XP_057776498.1`
3	Endosome membrane	内体膜	0.40000	`XP_057776498.1`
4	Cytoplasmic vesicle	细胞质囊泡	0.20000	`XP_057776498.1`
5	Nucleus	细胞核	0.00000	`XP_057776497.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:59995423`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B41,C5,C83,D11
`Chr7:59995576`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B64,B88,C2,C61,D11
`Chr7:59995686`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B108,C71
`Chr7:59995761`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C26
`Chr7:59996328`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B122,C24,C28
`Chr7:59996342`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C46
`Chr7:59997391`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B58,B70,C23,C27,C31
`Chr7:59997406`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr7:59997698`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B101
`Chr7:59997713`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A10,B1,B108,B13
`Chr7:59997743`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B76,C84
`Chr7:59997959`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A20,B26,B58

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776497.1

562 aa

281

562

SMP_LBD

PF17047 SMP_LBD 70-248 aa PF00168 C2 262-366 aa PF00168 C2 438-538 aa

XP_057776498.1

432 aa

216

432

SMP_LBD

PF17047 SMP_LBD 8-118 aa PF00168 C2 132-236 aa PF00168 C2 308-408 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776497.1`	Pfam	`PF17047`	SMP_LBD	Domain	70	248	2.2e-13	50.8	Synaptotagmin-like mitochondrial-lipid-binding domain
`XP_057776497.1`	Pfam	`PF00168`	C2	Domain	262	366	1.3e-56	189.9	C2 domain
`XP_057776497.1`	Pfam	`PF00168`	C2	Domain	438	538	1.3e-56	189.9	C2 domain
`XP_057776498.1`	Pfam	`PF17047`	SMP_LBD	Domain	8	118	1.1e-06	29.0	Synaptotagmin-like mitochondrial-lipid-binding domain
`XP_057776498.1`	Pfam	`PF00168`	C2	Domain	132	236	6e-57	191.0	C2 domain
`XP_057776498.1`	Pfam	`PF00168`	C2	Domain	308	408	6e-57	191.0	C2 domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057920514.1
ATGCAGTTTTCAGACACAAAATGCGTTGATCAAAAGATTTTGTCCGTCTGTTTTAATTTCTCTAGGACTTGCCTTTTTAGTCACATGGACTTTTTGAGAAAATTAAAGTAAATAACTCTACTTGATATACTATGTAGCATAAACTTTTGTTGGAATGTTGCAGAAGAAAGGGATAGATTACACAAGGCCTTTATTCTTTACCATATCCTAACTCCAACTCAACAACAAAGTTGAGAGAAAACACTGGTCTTGAGTGGAAA...

XM_057920515.1
GCGGCTGCAGTTGCATCGTTTGCCCGGATGACTTTTCTAGATTCAAGGAAACTCCTTCCAGATAAATTTTGCCCTTCTTGGGTTGTCTTCTCAGAGAGACAGAAGGAGTTTCCATGATCGATGGTGAACCCGACGAGGTTATCATGGAGTTGGAGCTGCAGTGGGACGGAAATCCGAAAATTTATCTTGATATTAAGACCAGAGTTGGTATTTCACTACCTATACAGGTGAAAAATATTGGTTTTACTGGGGTTTTCAGG...

CDS

2 records

下载 CDS FASTA

LOC130995281
ATGGGATTTTTTGTGGGATATGTTCTGGGTTTTGCTATTGGAGTTAGTATGATCGTGGGTTTTGCTCGCCACCAGCATACCAGATCAAAACATCGAACTGATTTGGCGGCTGCAGTTGCATCGTTTGCCCGGATGACTTTTCTAGATTCAAGGAAACTCCTTCCAGATAAATTTTGCCCTTCTTGGGTTGTCTTCTCAGAGAGACAGAAGTTAGATTGGTTGAATAGCCACCTTGACAAACTTTGGCCTTATGTTGACGA...

LOC130995281
ATGATCGATGGTGAACCCGACGAGGTTATCATGGAGTTGGAGCTGCAGTGGGACGGAAATCCGAAAATTTATCTTGATATTAAGACCAGAGTTGGTATTTCACTACCTATACAGGTGAAAAATATTGGTTTTACTGGGGTTTTCAGGATAATATTCAAACCATTAGCTGACGAGTTACCTTGTTTTGGAGCTCTTTGTTATTCACTGAGAGAAAAGAAAAAACTAGACTTTACACTGAAAGTAGTCGGAGGAGATCTATC...

Protein

2 records

下载 Protein FASTA

XP_057776497.1
MGFFVGYVLGFAIGVSMIVGFARHQHTRSKHRTDLAAAVASFARMTFLDSRKLLPDKFCPSWVVFSERQKLDWLNSHLDKLWPYVDEAASGVIRTSLEPILEQYKSAILVSLEFSKLTLGTVAPQFTGVSMIDGEPDEVIMELELQWDGNPKIYLDIKTRVGISLPIQVKNIGFTGVFRIIFKPLADELPCFGALCYSLREKKKLDFTLKVVGGDLSSIPGISDALEETIRDAVEDSITWPVRKIIPILPGDYSYLELKQ...

XP_057776498.1
MIDGEPDEVIMELELQWDGNPKIYLDIKTRVGISLPIQVKNIGFTGVFRIIFKPLADELPCFGALCYSLREKKKLDFTLKVVGGDLSSIPGISDALEETIRDAVEDSITWPVRKIIPILPGDYSYLELKQVGILEVKLIEAKNLTNKDIIGKSDPFAELFVRPLRDRIKTSKTIDNQTNPIWNEHFEFAVEDVSTQNLTIRLYDDEGVQSSEFIGCARLPLRDLEAGKVKDVWLKLVKDLEVQRDQKNRGQVHLEILYYP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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