Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004716`

染色体: Chr07 坐标: 60002858-60007235 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004716`
名称	SmilChr07G004716
描述	hydroxyproline O-galactosyltransferase HPGT3-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	60002858 - 60007235 / `+`

ID 对照

NCBI Gene ID	`LOC130995283`
GeneID	`130995283`
locus_tag	`-`
NCBI Name	`LOC130995283`
原始查询	`SmilChr07G004716`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hydroxyproline O-galactosyltransferase HPGT3-like
产物	hydroxyproline O-galactosyltransferase HPGT3-like
Arabidopsis	`AT2G25300` (AT2G25300) Galactosyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:817068] identity=74.9; qcov=0.976; evalue=2.63e-157; confidence=high
Rice	`Os06g0177300` - identity=67.9; qcov=0.979; evalue=3.95e-143; confidence=high
GO	GO:0000139 (Golgi membrane); GO:0006486 (GO:0006486); GO:0016758 (hexosyltransferase activity)
KEGG	-
Pfam	PF01762 (Galactosyl_T); PF13334 (DUF4094)
InterPro	-
eggNOG	-
NR	GeneID:130995283

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057776502.1`
2	Golgi stack	高尔基堆	0.20000	`XP_057776502.1`
3	Nucleus	细胞核	0.00000	`XP_057776503.1`
4	Chromosome	染色体	0.00000	`XP_057776503.1`
5	Centromere	着丝粒	0.00000	`XP_057776503.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:60003237`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C54
`Chr7:60003252`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C32,C68,C71
`Chr7:60003327`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr7:60003504`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B32,B58,C23,C27,C31
`Chr7:60005639`	`G`	`GT`	1bp_insertion	frameshift_variant	6	B38,C26,C70,C71,C8,D5
`Chr7:60005644`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C70,C71
`Chr7:60005834`	`G`	`GT`	1bp_insertion	frameshift_variant	7	B131,B47,B90,B95,C2,C43,C87
`Chr7:60005836`	`T`	`TAA`	2bp_insertion	frameshift_variant	6	B131,B47,B90,B95,C2,C43
`Chr7:60006727`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B122,C19
`Chr7:60006728`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B132,B48,B77
`Chr7:60006742`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C70,D9
`Chr7:60006765`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B21,C20

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776502.1

346 aa

173

346

DUF4094

Galactosyl_T

PF13334 DUF4094 27-104 aa PF01762 Galactosyl_T 134-323 aa

XP_057776503.1

286 aa

143

286

Galactosyl_T

PF01762 Galactosyl_T 74-263 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776502.1`	Pfam	`PF13334`	DUF4094	Family	27	104	8.9e-09	36.4	Domain of unknown function (DUF4094)
`XP_057776502.1`	Pfam	`PF01762`	Galactosyl_T	Family	134	323	1.9e-36	126.4	Galactosyltransferase
`XP_057776503.1`	Pfam	`PF01762`	Galactosyl_T	Family	74	263	4.1e-36	125.3	Galactosyltransferase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057920519.1
ACAATAATTGCAAATTGTTGAGATCATATTATATATTATGGTCAAAGGTTTTCCGAATCCCAAGTTGATTTTTGTAATTCAGTATTATCATTGAAAATGTCTATTAATTAATTACTATAATCCGGTTTCATAAATCCAAGCAAAAATAAATAAAACGTGGGGAACTAATTTGAAAAGAAAATAAAAAGAAATAATGAATAATATTAAAAAAGTAACTGCCTTTTTTTTTCCTCCAAACAAACTCTTAACGACTGCCGAAG...

XM_057920520.1
CCAATGGAGAGCAGCTTGCCGCTCACTACGGCGTCGTATTCGAAATCGGAGAGACGATCGAAATCCAAGAATGTGCAGACCTCAAAGTCTTCTGTTGTGCTTGCTTTTCTTTCTTGCCTTGCCTGGCTTTACGTTGCTGGCCGGTTTGTTTTTCTGCTCTTTTTTTGTTTTCTTTTACCAAATAATGTGGTTGACGGTTGAGGATTTTTGTTTTTTTATTTTATTTTTTTGATGATCACTCGCCACCTTTACCCTTTTTG...

CDS

2 records

下载 CDS FASTA

LOC130995283
ATGGAGAGCAGCTTGCCGCTCACTACGGCGTCGTATTCGAAATCGGAGAGACGATCGAAATCCAAGAATGTGCAGACCTCAAAGTCTTCTGTTGTGCTTGCTTTTCTTTCTTGCCTTGCCTGGCTTTACGTTGCTGGCCGTTTGTGGCAAGACGCAGAGAGCAGAAAGCTGCTGGAAAATTTGATGAAGAAGAATTCTGATCAGCGACCTAAGGTGCTCACAGTGGAAGACAAACTAATGGTCTATGGATGCAAGGACTT...

LOC130995283
ATGGGAAATGAAGCAGCAATTTTGCGACCTAAGGTGCTCACAGTGGAAGACAAACTAATGGTCTATGGATGCAAGGACTTGGAGCGAAAAATTGTTGAAGCAGAGATGGAACTGACATTAGCTAAGAGTCAAGGCTATCTTAAGAACCAAGTGCAGCCTTCTTCTGATAAAAAACTGCTTGCTGTAATCGTTATATATACTAGTTTTGGGGGTCGGTTGCGACGCAATGTCATCAGGGGGTCCTGGTTGTCAGAAGCTGA...

Protein

2 records

下载 Protein FASTA

XP_057776502.1
MESSLPLTTASYSKSERRSKSKNVQTSKSSVVLAFLSCLAWLYVAGRLWQDAESRKLLENLMKKNSDQRPKVLTVEDKLMVYGCKDLERKIVEAEMELTLAKSQGYLKNQVQPSSDKKLLAVIVIYTSFGGRLRRNVIRGSWLSEADALAKLEEKGIVIRFVIGRSPNRGDTLDRNIDEENRTKKDFLILDNHEEADEELPKKAKFFFSAAVQMWDAEFYIKVDDNVDLQLDDLIQLIQSRHGQDSAYIGCMKSGEVVAE...

XP_057776503.1
MGNEAAILRPKVLTVEDKLMVYGCKDLERKIVEAEMELTLAKSQGYLKNQVQPSSDKKLLAVIVIYTSFGGRLRRNVIRGSWLSEADALAKLEEKGIVIRFVIGRSPNRGDTLDRNIDEENRTKKDFLILDNHEEADEELPKKAKFFFSAAVQMWDAEFYIKVDDNVDLQLDDLIQLIQSRHGQDSAYIGCMKSGEVVAEEGMQWYEPEWWKFGDQKSYFRHAAGSIFILSKNLAKYIHINSASLKVYAHEDVSVGSWMM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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