当前解析结果
SmilChr07G004729| 统一新 Gene ID | SmilChr07G004729 |
|---|---|
| 名称 | SmilChr07G004729 |
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 60166129 - 60168456 / - |
| NCBI Gene ID | LOC130994551 |
|---|---|
| GeneID | 130994551 |
| locus_tag | - |
| NCBI Name | LOC130994551 |
| 原始查询 | SmilChr07G004729 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 产物 | putative late blight resistance protein homolog R1A-10 |
| Arabidopsis | AT3G46530 (RPP13)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:823806] identity=30.9; qcov=0.876; evalue=1.37e-65; confidence=low |
| Rice | Os11g0633500- identity=36.8; qcov=0.508; evalue=2.44e-70; confidence=medium |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994551 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057775577.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057775577.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057775577.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057775577.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057775577.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:60166160 |
AGT |
A |
2bp_deletion | frameshift_variant | 2 | B2,C87 |
Chr7:60166160 |
AGT |
A |
2bp_deletion | CDS_variant | 2 | B2,C87 |
Chr7:60166176 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B43,C71,D4 |
Chr7:60166188 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B72,C67,C68 |
Chr7:60166192 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B39,C42 |
Chr7:60166195 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A4,B137 |
Chr7:60166205 |
TTA |
T |
2bp_deletion | frameshift_variant | 8 | A9,B132,B48,B89,C29,C43,C44,D6 |
Chr7:60166227 |
G |
A |
EMS_canonical_SNV | stop_gained | 23 | A13,A22,B109,B138,B28,B37,B57,B58,B59,B70,B77,B79,B91,B92,C20,C24,C27,C3,C36,C44,C5,C56,C75 |
Chr7:60166246 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C10 |
Chr7:60166251 |
G |
GAT |
2bp_insertion | frameshift_variant | 18 | B1,B102,B131,B17,B30,B35,B39,B44,B48,B58,B61,B65,B91,C28,C56,C60,C81,D3 |
Chr7:60166256 |
TCG |
T |
2bp_deletion | frameshift_variant | 17 | B1,B131,B17,B30,B35,B39,B44,B48,B58,B61,B65,B91,C28,C56,C60,C81,D3 |
Chr7:60166269 |
CT |
C |
1bp_deletion | frameshift_variant | 38 | A10,A14,A5,A9,B1,B102,B112,B114,B131,B17,B21,B23,B30,B31,B35,B39,B44,B48,B58,B61,B65,B71,B78,B81,B91,B96,C13,C19,C26,C28,C4,C56,C60,C62,C8,C81,D10,D3 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057775577.1PF00931
NB-ARC 64-225 aa
PF23559
WHD_DRP 321-381 aa
PF23598
LRR_14 433-623 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057775577.1 |
Pfam | PF00931 |
NB-ARC | Domain | 64 | 225 | 3.7e-44 | 151.1 | NB-ARC domain |
XP_057775577.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 321 | 381 | 7.1e-18 | 65.1 | Disease resistance protein Winged helix domain |
XP_057775577.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 433 | 623 | 5.9e-17 | 62.2 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。