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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G004741

染色体: Chr07 坐标: 60260287-60265962 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G004741
名称SmilChr07G004741
描述cytochrome b561, DM13 and DOMON domain-containing protein At5g54830
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向60260287 - 60265962 / -

ID 对照

NCBI Gene IDLOC130993106
GeneID130993106
locus_tag-
NCBI NameLOC130993106
原始查询SmilChr07G004741

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述cytochrome b561, DM13 and DOMON domain-containing protein At5g54830
产物cytochrome b561%2C DM13 and DOMON domain-containing protein At5g54830
ArabidopsisAT5G54830 (AT5G54830)
DOMON domain-containing protein / dopamine beta-monooxygenase N-terminal domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:835573]
identity=60.9; qcov=1.02; evalue=0; confidence=high
RiceOs09g0557700
-
identity=58.4; qcov=0.987; evalue=0; confidence=high
GOGO:0017004 (cytochrome complex assembly); GO:0020037 (heme binding)
KEGG-
PfamPF01578 (Cytochrom_C_asm); PF03188 (Cytochrom_B561); PF03351 (DOMON); PF10517 (DM13); PF25489 (At5g54830)
InterPro-
eggNOG-
NRGeneID:130993106

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057773824.1
2 Vacuole 液泡 0.40000 XP_057773824.1
3 Cytoplasmic vesicle 细胞质囊泡 0.20000 XP_057773824.1
4 Vacuole membrane 液泡膜 0.20000 XP_057773824.1
5 Nucleus 细胞核 0.00000 XP_057773824.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:60263035 G A EMS_canonical_SNV CDS_variant 2 B104,B79
Chr7:60263107 G A EMS_canonical_SNV CDS_variant 3 B35,C30,C48
Chr7:60263293 G A EMS_canonical_SNV CDS_variant 2 A7,C5
Chr7:60263311 G A EMS_canonical_SNV CDS_variant 2 A7,C5
Chr7:60263326 C T EMS_canonical_SNV CDS_variant 4 A1,B35,C45,C6
Chr7:60263365 C T EMS_canonical_SNV CDS_variant 2 A7,C5
Chr7:60263416 G A EMS_canonical_SNV CDS_variant 3 B35,C30,C48
Chr7:60263673 G A EMS_canonical_SNV CDS_variant 3 A1,B35,C45
Chr7:60263686 C T EMS_canonical_SNV CDS_variant 2 A1,C45
Chr7:60263719 G A EMS_canonical_SNV CDS_variant 1 D10
Chr7:60263722 C T EMS_canonical_SNV CDS_variant 5 B104,B126,C40,C62,D11
Chr7:60263893 C T EMS_canonical_SNV CDS_variant 4 A1,B35,C45,C6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057773824.1
874 aa
N
1
437
874
DM13
DOMON
At5g54830
DOMON
Cytochrom_C_asm
Cytochrom_B561
C
PF10517 DM13 46-141 aa PF03351 DOMON 162-307 aa PF25489 At5g54830 357-482 aa PF03351 DOMON 496-619 aa PF01578 Cytochrom_C_asm 659-826 aa PF03188 Cytochrom_B561 662-790 aa
XP_057773825.1
874 aa
N
1
437
874
DM13
DOMON
At5g54830
DOMON
Cytochrom_C_asm
Cytochrom_B561
C
PF10517 DM13 46-141 aa PF03351 DOMON 162-307 aa PF25489 At5g54830 357-482 aa PF03351 DOMON 496-619 aa PF01578 Cytochrom_C_asm 659-826 aa PF03188 Cytochrom_B561 662-790 aa
XP_057773826.1
874 aa
N
1
437
874
DM13
DOMON
At5g54830
DOMON
Cytochrom_C_asm
Cytochrom_B561
C
PF10517 DM13 46-141 aa PF03351 DOMON 162-307 aa PF25489 At5g54830 357-482 aa PF03351 DOMON 496-619 aa PF01578 Cytochrom_C_asm 659-826 aa PF03188 Cytochrom_B561 662-790 aa
XP_057773827.1
874 aa
N
1
437
874
DM13
DOMON
At5g54830
DOMON
Cytochrom_C_asm
Cytochrom_B561
C
PF10517 DM13 46-141 aa PF03351 DOMON 162-307 aa PF25489 At5g54830 357-482 aa PF03351 DOMON 496-619 aa PF01578 Cytochrom_C_asm 659-826 aa PF03188 Cytochrom_B561 662-790 aa
XP_057773828.1
874 aa
N
1
437
874
DM13
DOMON
At5g54830
DOMON
Cytochrom_C_asm
Cytochrom_B561
C
PF10517 DM13 46-141 aa PF03351 DOMON 162-307 aa PF25489 At5g54830 357-482 aa PF03351 DOMON 496-619 aa PF01578 Cytochrom_C_asm 659-826 aa PF03188 Cytochrom_B561 662-790 aa
XP_057773829.1
874 aa
N
1
437
874
DM13
DOMON
At5g54830
DOMON
Cytochrom_C_asm
Cytochrom_B561
C
PF10517 DM13 46-141 aa PF03351 DOMON 162-307 aa PF25489 At5g54830 357-482 aa PF03351 DOMON 496-619 aa PF01578 Cytochrom_C_asm 659-826 aa PF03188 Cytochrom_B561 662-790 aa
XP_057773830.1
874 aa
N
1
437
874
DM13
DOMON
At5g54830
DOMON
Cytochrom_C_asm
Cytochrom_B561
C
PF10517 DM13 46-141 aa PF03351 DOMON 162-307 aa PF25489 At5g54830 357-482 aa PF03351 DOMON 496-619 aa PF01578 Cytochrom_C_asm 659-826 aa PF03188 Cytochrom_B561 662-790 aa
XP_057773831.1
874 aa
N
1
437
874
DM13
DOMON
At5g54830
DOMON
Cytochrom_C_asm
Cytochrom_B561
C
PF10517 DM13 46-141 aa PF03351 DOMON 162-307 aa PF25489 At5g54830 357-482 aa PF03351 DOMON 496-619 aa PF01578 Cytochrom_C_asm 659-826 aa PF03188 Cytochrom_B561 662-790 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057773824.1 Pfam PF10517 DM13 Domain 46 141 2.1e-13 51.5 Electron transfer DM13
XP_057773824.1 Pfam PF03351 DOMON Domain 162 307 1.3e-42 145.6 DOMON domain
XP_057773824.1 Pfam PF25489 At5g54830 Domain 357 482 2.2e-69 232.0 At5g54830-like domain
XP_057773824.1 Pfam PF03351 DOMON Domain 496 619 1.3e-42 145.6 DOMON domain
XP_057773824.1 Pfam PF01578 Cytochrom_C_asm Family 659 826 9.8e-09 35.9 Cytochrome C assembly protein
XP_057773824.1 Pfam PF03188 Cytochrom_B561 Family 662 790 1.6e-07 32.4 Eukaryotic cytochrome b561
XP_057773825.1 Pfam PF10517 DM13 Domain 46 141 2.1e-13 51.5 Electron transfer DM13
XP_057773825.1 Pfam PF03351 DOMON Domain 162 307 1.3e-42 145.6 DOMON domain
XP_057773825.1 Pfam PF25489 At5g54830 Domain 357 482 2.2e-69 232.0 At5g54830-like domain
XP_057773825.1 Pfam PF03351 DOMON Domain 496 619 1.3e-42 145.6 DOMON domain
XP_057773825.1 Pfam PF01578 Cytochrom_C_asm Family 659 826 9.8e-09 35.9 Cytochrome C assembly protein
XP_057773825.1 Pfam PF03188 Cytochrom_B561 Family 662 790 1.6e-07 32.4 Eukaryotic cytochrome b561
XP_057773826.1 Pfam PF10517 DM13 Domain 46 141 2.1e-13 51.5 Electron transfer DM13
XP_057773826.1 Pfam PF03351 DOMON Domain 162 307 1.3e-42 145.6 DOMON domain
XP_057773826.1 Pfam PF25489 At5g54830 Domain 357 482 2.2e-69 232.0 At5g54830-like domain
XP_057773826.1 Pfam PF03351 DOMON Domain 496 619 1.3e-42 145.6 DOMON domain
XP_057773826.1 Pfam PF01578 Cytochrom_C_asm Family 659 826 9.8e-09 35.9 Cytochrome C assembly protein
XP_057773826.1 Pfam PF03188 Cytochrom_B561 Family 662 790 1.6e-07 32.4 Eukaryotic cytochrome b561
XP_057773827.1 Pfam PF10517 DM13 Domain 46 141 2.1e-13 51.5 Electron transfer DM13
XP_057773827.1 Pfam PF03351 DOMON Domain 162 307 1.3e-42 145.6 DOMON domain
XP_057773827.1 Pfam PF25489 At5g54830 Domain 357 482 2.2e-69 232.0 At5g54830-like domain
XP_057773827.1 Pfam PF03351 DOMON Domain 496 619 1.3e-42 145.6 DOMON domain
XP_057773827.1 Pfam PF01578 Cytochrom_C_asm Family 659 826 9.8e-09 35.9 Cytochrome C assembly protein
XP_057773827.1 Pfam PF03188 Cytochrom_B561 Family 662 790 1.6e-07 32.4 Eukaryotic cytochrome b561
XP_057773828.1 Pfam PF10517 DM13 Domain 46 141 2.1e-13 51.5 Electron transfer DM13
XP_057773828.1 Pfam PF03351 DOMON Domain 162 307 1.3e-42 145.6 DOMON domain
XP_057773828.1 Pfam PF25489 At5g54830 Domain 357 482 2.2e-69 232.0 At5g54830-like domain
XP_057773828.1 Pfam PF03351 DOMON Domain 496 619 1.3e-42 145.6 DOMON domain
XP_057773828.1 Pfam PF01578 Cytochrom_C_asm Family 659 826 9.8e-09 35.9 Cytochrome C assembly protein
XP_057773828.1 Pfam PF03188 Cytochrom_B561 Family 662 790 1.6e-07 32.4 Eukaryotic cytochrome b561
XP_057773829.1 Pfam PF10517 DM13 Domain 46 141 2.1e-13 51.5 Electron transfer DM13
XP_057773829.1 Pfam PF03351 DOMON Domain 162 307 1.3e-42 145.6 DOMON domain
XP_057773829.1 Pfam PF25489 At5g54830 Domain 357 482 2.2e-69 232.0 At5g54830-like domain
XP_057773829.1 Pfam PF03351 DOMON Domain 496 619 1.3e-42 145.6 DOMON domain
XP_057773829.1 Pfam PF01578 Cytochrom_C_asm Family 659 826 9.8e-09 35.9 Cytochrome C assembly protein
XP_057773829.1 Pfam PF03188 Cytochrom_B561 Family 662 790 1.6e-07 32.4 Eukaryotic cytochrome b561
XP_057773830.1 Pfam PF10517 DM13 Domain 46 141 2.1e-13 51.5 Electron transfer DM13
XP_057773830.1 Pfam PF03351 DOMON Domain 162 307 1.3e-42 145.6 DOMON domain
XP_057773830.1 Pfam PF25489 At5g54830 Domain 357 482 2.2e-69 232.0 At5g54830-like domain
XP_057773830.1 Pfam PF03351 DOMON Domain 496 619 1.3e-42 145.6 DOMON domain
XP_057773830.1 Pfam PF01578 Cytochrom_C_asm Family 659 826 9.8e-09 35.9 Cytochrome C assembly protein
XP_057773830.1 Pfam PF03188 Cytochrom_B561 Family 662 790 1.6e-07 32.4 Eukaryotic cytochrome b561
XP_057773831.1 Pfam PF10517 DM13 Domain 46 141 2.1e-13 51.5 Electron transfer DM13
XP_057773831.1 Pfam PF03351 DOMON Domain 162 307 1.3e-42 145.6 DOMON domain
XP_057773831.1 Pfam PF25489 At5g54830 Domain 357 482 2.2e-69 232.0 At5g54830-like domain
XP_057773831.1 Pfam PF03351 DOMON Domain 496 619 1.3e-42 145.6 DOMON domain
XP_057773831.1 Pfam PF01578 Cytochrom_C_asm Family 659 826 9.8e-09 35.9 Cytochrome C assembly protein
XP_057773831.1 Pfam PF03188 Cytochrom_B561 Family 662 790 1.6e-07 32.4 Eukaryotic cytochrome b561

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

8 records

下载 cDNA FASTA
XM_057917842.1
CTAATTAGAGATTTACAATTACAACGGTTGCTTAAGGCATAAGCTGCGCAACCCTTAAAAAGGTTGCAACTTAATGGAGAGACGAGTTTGAGAAATTTGTATTCTCAAAACCCCTGATTCAAGTTTAGCTGCTTCTCGTCTTCTTCGTCAACCCTCCGCAACATTCCAACTCACCTCTCTCGAACTCTGCTACAGGTTGGTTTCTCTCACTCTCTGATGTGATCTCGGTATCCTTACATATATCTATCTATATATGCATG...
XM_057917844.1
CTAATTAGAGATTTACAATTACAACGGTTGCTTAAGGCATAAGCTGCGCAACCCTTAAAAAGGTTGCAACTTAATGGAGAGACGAGTTTGAGAAATTTGTATTCTCAAAACCCCTGATTCAAGTTTAGCTGCTTCTCGTCTTCTTCGTCAACCCTCCGCAACATTCCAACTCACCTCTCTCGAACTCTGCTACAGGTTGGTTTCTCTCACTCTCTGATGTGATCTCGGTATCCTTACATATATCTATCTATATATGCATG...

CDS

8 records

下载 CDS FASTA
LOC130993106
ATGGCCCCAATCGCACTCTCTCATTTGGGGCTATTTTTCAATTTTATGTTTTTGATTAACTTCTCGTATTCCGATCCGACTTTGGACTGCCCCCGCACCAATACCTCCCTTCTCAACTTCACCTCTCACTTCGCCTTGGAGCAGCACCAGCTCCGCGGTATCTTCTCCATCATCAACGATTGCTCCTTTCAGGTTTCCCAATTTGACATGCTCGCCGGCGCCGACGTCCACTGGTGGGGCGCCGTCGGCGACGATTTTCA...
LOC130993106
ATGGCCCCAATCGCACTCTCTCATTTGGGGCTATTTTTCAATTTTATGTTTTTGATTAACTTCTCGTATTCCGATCCGACTTTGGACTGCCCCCGCACCAATACCTCCCTTCTCAACTTCACCTCTCACTTCGCCTTGGAGCAGCACCAGCTCCGCGGTATCTTCTCCATCATCAACGATTGCTCCTTTCAGGTTTCCCAATTTGACATGCTCGCCGGCGCCGACGTCCACTGGTGGGGCGCCGTCGGCGACGATTTTCA...

Protein

8 records

下载 Protein FASTA
XP_057773824.1
MAPIALSHLGLFFNFMFLINFSYSDPTLDCPRTNTSLLNFTSHFALEQHQLRGIFSIINDCSFQVSQFDMLAGADVHWWGAVGDDFQNLTNGFPVSDSTLNQTYKNDTFTVRLRKNVTWDQMKLLAIWDVPTASDFGYVLLNGSGNGKEQPTVFDNCKVLSDSYRIRWSLKEAENEIEIGLEAAIGVEDYMAFGWANESASGSLMLGGDVAITGFEEDGLPFAHDYYITKYSECMIAEDGNVKGVCPDTLYKPTDPVVMV...
XP_057773825.1
MAPIALSHLGLFFNFMFLINFSYSDPTLDCPRTNTSLLNFTSHFALEQHQLRGIFSIINDCSFQVSQFDMLAGADVHWWGAVGDDFQNLTNGFPVSDSTLNQTYKNDTFTVRLRKNVTWDQMKLLAIWDVPTASDFGYVLLNGSGNGKEQPTVFDNCKVLSDSYRIRWSLKEAENEIEIGLEAAIGVEDYMAFGWANESASGSLMLGGDVAITGFEEDGLPFAHDYYITKYSECMIAEDGNVKGVCPDTLYKPTDPVVMV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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