当前解析结果
SmilChr08G000015| 统一新 Gene ID | SmilChr08G000015 |
|---|---|
| 名称 | SmilChr08G000015 |
| 描述 | uncharacterized SmilChr08G000015 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 122404 - 126745 / - |
| NCBI Gene ID | LOC130999638 |
|---|---|
| GeneID | 130999638 |
| locus_tag | - |
| NCBI Name | LOC130999638 |
| 原始查询 | SmilChr08G000015 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Ribosomal protein S5/Elongation factor G/III/V family protein [Source:NCBI gene (formerly Entrezgene);Acc:821872]; symbol=AT3G22980; hit=AT3G22980; species=arabidopsis; confidence=high |
| 产物 | Ribosomal protein S5/Elongation factor G/III/V family protein [Source:NCBI gene (formerly Entrezgene);Acc:821872]; symbol=AT3G22980; hit=AT3G22980; species=arabidopsis; confidence=high |
| Arabidopsis | AT3G22980 (AT3G22980)Ribosomal protein S5/Elongation factor G/III/V family protein [Source:NCBI gene (formerly Entrezgene);Acc:821872] identity=70.7; qcov=0.987; evalue=0; confidence=high |
| Rice | Os03g0650700- identity=60.9; qcov=0.99; evalue=0; confidence=high |
| GO | GO:0003924 (GTPase activity); GO:0005525 (GTP binding); GO:0005829 (cytosol); GO:0042256 (cytosolic ribosome assembly); GO:0043022 (ribosome binding); GO:1990904 (ribonucleoprotein complex) |
| KEGG | smil03008 (Ribosome biogenesis in eukaryotes - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00009 (GTP_EFTU); PF00679 (EFG_C); PF14492 (EFG_III); PF25118 (EFL1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999638 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057781215.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057781215.1 |
| 3 | Nucleus | 细胞核 | 0.60000 | XP_057781215.1 |
| 4 | Nucleolus | 核仁 | 0.20000 | XP_057781215.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057781215.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:122758 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B22,B44,C17,C9,D8 |
Chr8:122880 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A2,B85 |
Chr8:123211 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B114,B31 |
Chr8:123308 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B13,C12,C29,C57 |
Chr8:123353 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B100,B127,B45,C41 |
Chr8:123367 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B102 |
Chr8:123445 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B102 |
Chr8:123556 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A3,C77 |
Chr8:123576 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C85 |
Chr8:123604 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A2,B136,B85 |
Chr8:123680 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B139,B18,C33,C63,D10 |
Chr8:123738 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B14,B93 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057781215.1PF00009
GTP_EFTU 35-253 aa
PF14492
EFG_III 559-628 aa
PF25118
EFL1 678-777 aa
PF00679
EFG_C 909-994 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781215.1 |
Pfam | PF00009 |
GTP_EFTU | Domain | 35 | 253 | 1.6e-45 | 155.7 | Elongation factor Tu GTP binding domain |
XP_057781215.1 |
Pfam | PF14492 |
EFG_III | Domain | 559 | 628 | 1.6e-07 | 32.0 | Elongation Factor G, domain III |
XP_057781215.1 |
Pfam | PF25118 |
EFL1 | Domain | 678 | 777 | 5.9e-10 | 40.4 | Elongation factor-like GTPase 1-like domain |
XP_057781215.1 |
Pfam | PF00679 |
EFG_C | Domain | 909 | 994 | 2.1e-18 | 66.9 | Elongation factor G C-terminus |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。