Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000024`

染色体: Chr08 坐标: 160764-165788 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000024`
名称	SmilChr08G000024
描述	potassium transporter 4
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	160764 - 165788 / `+`

ID 对照

NCBI Gene ID	`LOC130999648`
GeneID	`130999648`
locus_tag	`-`
NCBI Name	`LOC130999648`
原始查询	`SmilChr08G000024`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	potassium transporter 4
产物	potassium transporter 4
Arabidopsis	`AT3G02050` (KUP3) K+ uptake transporter 3 [Source:NCBI gene (formerly Entrezgene);Acc:821063] identity=71.8; qcov=0.953; evalue=0; confidence=high
Rice	`Os01g0935500` (OsHAK2) - identity=64; qcov=0.946; evalue=0; confidence=high
GO	GO:0009932 (cell tip growth); GO:0015079 (potassium ion transmembrane transporter activity); GO:0016020 (membrane); GO:0071805 (potassium ion transmembrane transport)
KEGG	-
Pfam	PF02705 (K_trans); PF22776 (K_trans_C)
InterPro	-
eggNOG	-
NR	GeneID:130999648

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Vacuole	液泡	1.00000	`XP_057781223.1`
2	Vacuole membrane	液泡膜	1.00000	`XP_057781223.1`
3	Cell membrane	细胞膜	0.80000	`XP_057781223.1`
4	Nucleus	细胞核	0.00000	`XP_057781223.1`
5	Chromosome	染色体	0.00000	`XP_057781223.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:161801`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B128,B136,B93,C35
`Chr8:162544`	`C`	`CA`	1bp_insertion	frameshift_variant	4	B113,B15,B51,B8
`Chr8:162544`	`C`	`CA`	1bp_insertion	CDS_variant	4	B113,B15,B51,B8
`Chr8:162550`	`A`	`ACT`	2bp_insertion	frameshift_variant	5	B104,B2,B82,C87,D5
`Chr8:162550`	`A`	`ACT`	2bp_insertion	CDS_variant	5	B104,B2,B82,C87,D5
`Chr8:162553`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B44,C19,C34
`Chr8:162555`	`TGC`	`T`	2bp_deletion	frameshift_variant	11	A4,A7,B10,B137,B55,B66,B78,C16,C2,C86,D11
`Chr8:162576`	`G`	`GA`	1bp_insertion	frameshift_variant	222	A1,A10,A11,A13,A14,A15,A16,A19,A20,A22,A23,A24,A25,A3,A4,A5,A6,A7,A8,A9,B1,B10,B102,B103,B104,B105,B106,B108,B109,B11,B110,B111,B113,B114,B115,B118,B119,B12,B120,B121,B123,B124,B125,B126,B127,B128,B129,B13,B130,B131,B133,B134,B135,B136,B137,B138,B139,B14,B140,B15,B16,B17,B18,B20,B21,B22,B23,B24,B25,B26,B28,B29,B3,B31,B32,B33,B34,B35,B36,B37,B38,B39,B4,B40,B41,B42,B43,B44,B46,B47,B48,B49,B5,B50,B51,B52,B53,B55,B56,B57,B58,B59,B6,B60,B61,B62,B63,B65,B66,B67,B68,B69,B7,B70,B71,B73,B74,B75,B76,B77,B78,B8,B80,B81,B82,B83,B84,B85,B86,B87,B88,B89,B9,B90,B91,B92,B93,B94,B95,B96,B97,B98,B99,C10,C11,C12,C13,C14,C16,C17,C18,C2,C21,C22,C23,C24,C25,C26,C27,C28,C3,C30,C32,C33,C34,C35,C36,C37,C38,C39,C4,C40,C41,C42,C43,C44,C45,C47,C48,C49,C5,C50,C51,C53,C55,C56,C57,C58,C59,C60,C61,C62,C64,C65,C66,C67,C68,C7,C70,C71,C72,C73,C75,C76,C79,C80,C81,C82,C83,C84,C85,C86,C87,C9,D1,D10,D11,D2,D5,D6,D7,D8
`Chr8:162598`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B104,B25,C65,C87,D5
`Chr8:162600`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B44,C19,C34
`Chr8:162603`	`TC`	`T`	1bp_deletion	frameshift_variant	3	B44,C19,C34
`Chr8:162603`	`TC`	`T`	1bp_deletion	CDS_variant	3	B44,C19,C34

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781223.1

816 aa

408

816

K_trans

K_trans_C

PF02705 K_trans 59-532 aa PF22776 K_trans_C 562-815 aa

XP_057781224.1

816 aa

408

816

K_trans

K_trans_C

PF02705 K_trans 59-532 aa PF22776 K_trans_C 562-815 aa

XP_057781225.1

816 aa

408

816

K_trans

K_trans_C

PF02705 K_trans 59-532 aa PF22776 K_trans_C 562-815 aa

XP_057781226.1

816 aa

408

816

K_trans

K_trans_C

PF02705 K_trans 59-532 aa PF22776 K_trans_C 562-815 aa

XP_057781227.1

816 aa

408

816

K_trans

K_trans_C

PF02705 K_trans 59-532 aa PF22776 K_trans_C 562-815 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781223.1`	Pfam	`PF02705`	K_trans	Domain	59	532	7.8e-164	546.2	K+ potassium transporter integral membrane domain
`XP_057781223.1`	Pfam	`PF22776`	K_trans_C	Domain	562	815	1.4e-27	97.0	K+ potassium transporter C-terminal domain
`XP_057781224.1`	Pfam	`PF02705`	K_trans	Domain	59	532	7.8e-164	546.2	K+ potassium transporter integral membrane domain
`XP_057781224.1`	Pfam	`PF22776`	K_trans_C	Domain	562	815	1.4e-27	97.0	K+ potassium transporter C-terminal domain
`XP_057781225.1`	Pfam	`PF02705`	K_trans	Domain	59	532	7.8e-164	546.2	K+ potassium transporter integral membrane domain
`XP_057781225.1`	Pfam	`PF22776`	K_trans_C	Domain	562	815	1.4e-27	97.0	K+ potassium transporter C-terminal domain
`XP_057781226.1`	Pfam	`PF02705`	K_trans	Domain	59	532	7.8e-164	546.2	K+ potassium transporter integral membrane domain
`XP_057781226.1`	Pfam	`PF22776`	K_trans_C	Domain	562	815	1.4e-27	97.0	K+ potassium transporter C-terminal domain
`XP_057781227.1`	Pfam	`PF02705`	K_trans	Domain	59	532	7.8e-164	546.2	K+ potassium transporter integral membrane domain
`XP_057781227.1`	Pfam	`PF22776`	K_trans_C	Domain	562	815	1.4e-27	97.0	K+ potassium transporter C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057925244.1
GAATTCTCAATAAACATCAACAAAAACAAACTTTCCCATAACAAATAATCAAAGACTCGTACGAAAAGATAAATCAATCAATAAATCACGTTTGTCCCATTCGATGATTGGGATATTGCACAAACTTTCAACCCATCAAAATTAGTTGATTAATTATTATTATTATTATTATGCTGCGAAGCTTTTAGTATATATTTTTTTATTGCATTATTTGTCTGTGAGCAATCCTTATTGAACTGTGTGTGTGTGTGCATGTGTGT...

XM_057925242.1
ACATCAACAAAAACAAACTTTCCCATAACAAATAATCAAAGACTCGTACGAAAAGATAAATCAATCAATAAATCACGTTTGTCCCATTCGATGATTGGGATATTGCACAAACTTTCAACCCATCAAAATTAGTTGATTAATTATTATTATTATTATTATGCTGCGAAGCTTTTAGTATATATTTTTTTATTGCATTATTTGTCTGTGAGCAATCCTTATTGAACTGTGTGTGTGTGTGCATGTGTGTGATTTCATTTCAT...

CDS

5 records

下载 CDS FASTA

LOC130999648
ATGAGCCGAATAGATATTGAACCTGAGGAAGACGGCAATGACTTGCCACCACAAATGGCAGCGGATGAGGGTCAAGAACCAACCCATCTTCATGGACAGGATGGGGGAGATGAAACTTCTCGGACGGGTAGGAACAGGAGGGAGTTACCATGGAAGTGTATTCCGGTGTCTCTAGCACTAGCATATCAGAGCTTTGGGGTGGTATACGGAGATCTGAGCACTTCACCACTATATGTTTACAGAAGTATATTTTCTGGGAT...

Protein

5 records

下载 Protein FASTA

XP_057781223.1
MSRIDIEPEEDGNDLPPQMAADEGQEPTHLHGQDGGDETSRTGRNRRELPWKCIPVSLALAYQSFGVVYGDLSTSPLYVYRSIFSGMSHKHQSTDAIFGAFSLIFWTLTLIPLLKYVIIILSADDNGEGGTFALYSLLCRHGKFSLLPNQQAADEELSAYKYGSLGQSSPSLQLKRSIEKRKNLRTVLLLIVLLGAGMVIGDGVVTPAMSVLSAVSGLKAAHTKLPSGGVRLICCVILVGLFALQHSGTHKVGILFAPVV...

XP_057781224.1
MSRIDIEPEEDGNDLPPQMAADEGQEPTHLHGQDGGDETSRTGRNRRELPWKCIPVSLALAYQSFGVVYGDLSTSPLYVYRSIFSGMSHKHQSTDAIFGAFSLIFWTLTLIPLLKYVIIILSADDNGEGGTFALYSLLCRHGKFSLLPNQQAADEELSAYKYGSLGQSSPSLQLKRSIEKRKNLRTVLLLIVLLGAGMVIGDGVVTPAMSVLSAVSGLKAAHTKLPSGGVRLICCVILVGLFALQHSGTHKVGILFAPVV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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