当前解析结果
SmilChr08G000025| 统一新 Gene ID | SmilChr08G000025 |
|---|---|
| 名称 | SmilChr08G000025 |
| 描述 | probable disease resistance protein At1g58602 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 170780 - 174877 / - |
| NCBI Gene ID | LOC130999650 |
|---|---|
| GeneID | 130999650 |
| locus_tag | - |
| NCBI Name | LOC130999650 |
| 原始查询 | SmilChr08G000025 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable disease resistance protein At1g58602 |
| 产物 | probable disease resistance protein At1g58602 |
| Arabidopsis | AT1G58390 (AT1G58390)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:842208] identity=32.7; qcov=1.01; evalue=5.28e-132; confidence=low |
| Rice | Os07g0186500- identity=28.9; qcov=1.03; evalue=7.74e-75; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF18052 (Rx_N); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999650 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057781228.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057781228.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057781228.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057781228.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057781228.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:171475 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B77,C73 |
Chr8:171490 |
A |
AT |
1bp_insertion | frameshift_variant | 1 | B21 |
Chr8:171490 |
A |
AT |
1bp_insertion | CDS_variant | 1 | B21 |
Chr8:171517 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C48 |
Chr8:171555 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A14 |
Chr8:171567 |
AG |
A |
1bp_deletion | frameshift_variant | 51 | A10,A23,A8,B10,B112,B128,B131,B133,B21,B23,B25,B31,B37,B4,B43,B49,B50,B53,B61,B65,B77,B82,B83,B87,B89,B95,B96,C1,C10,C20,C23,C26,C35,C36,C37,C4,C41,C44,C45,C48,C56,C63,C64,C70,C77,C78,C83,D1,D11,D4,D6 |
Chr8:171570 |
T |
TC |
1bp_insertion | frameshift_variant | 40 | A23,A8,A9,B10,B110,B112,B128,B133,B139,B21,B23,B25,B30,B31,B4,B43,B49,B53,B58,B61,B64,B83,B95,C10,C20,C23,C26,C35,C4,C41,C44,C48,C50,C55,C63,C64,C77,C83,D11,D4 |
Chr8:171572 |
T |
TG |
1bp_insertion | frameshift_variant | 59 | A1,A16,A20,A21,A8,B101,B105,B108,B11,B114,B118,B132,B135,B139,B18,B20,B24,B37,B41,B53,B56,B6,B61,B75,B79,B8,B83,B85,B90,B92,B93,C10,C12,C13,C15,C2,C20,C21,C22,C30,C4,C48,C50,C60,C61,C64,C66,C67,C68,C69,C7,C77,C78,C8,C82,C85,D10,D3,D4 |
Chr8:171576 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B85 |
Chr8:171577 |
T |
TA |
1bp_insertion | frameshift_variant | 17 | A6,B103,B105,B113,B118,B126,B137,B25,B3,B50,B53,B77,B86,C31,C69,C76,C87 |
Chr8:171590 |
GA |
G |
1bp_deletion | frameshift_variant | 9 | A9,B21,B4,B43,B53,C20,C23,C44,C64 |
Chr8:171605 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B85,C71 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057781228.1PF18052
Rx_N 5-81 aa
PF00931
NB-ARC 178-346 aa
PF23559
WHD_DRP 432-508 aa
PF23598
LRR_14 585-876 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781228.1 |
Pfam | PF18052 |
Rx_N | Domain | 5 | 81 | 1.6e-19 | 70.5 | Rx N-terminal domain |
XP_057781228.1 |
Pfam | PF00931 |
NB-ARC | Domain | 178 | 346 | 2.1e-36 | 125.8 | NB-ARC domain |
XP_057781228.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 432 | 508 | 3e-11 | 43.9 | Disease resistance protein Winged helix domain |
XP_057781228.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 585 | 876 | 2.4e-26 | 93.1 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。