当前解析结果
SmilChr08G000031| 统一新 Gene ID | SmilChr08G000031 |
|---|---|
| 名称 | SmilChr08G000031 |
| 描述 | probable disease resistance protein At1g58602 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 195224 - 198523 / + |
| NCBI Gene ID | LOC130999655 |
|---|---|
| GeneID | 130999655 |
| locus_tag | - |
| NCBI Name | LOC130999655 |
| 原始查询 | SmilChr08G000031 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable disease resistance protein At1g58602 |
| 产物 | probable disease resistance protein At1g58602 |
| Arabidopsis | AT5G43470 (RPP8)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:834367] identity=33.8; qcov=1.02; evalue=6.2e-134; confidence=low |
| Rice | Os07g0186500- identity=27.8; qcov=1.03; evalue=3.07e-73; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF13401 (AAA_22); PF18052 (Rx_N); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999655 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057781235.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057781235.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057781235.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057781235.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057781235.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:195418 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B114,B31,C14 |
Chr8:195457 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A7,B66,C59 |
Chr8:195476 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B12,B39,C10,C5 |
Chr8:195480 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B12,B39,C10,C5 |
Chr8:195496 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B12,B39,C10,C5 |
Chr8:195497 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B12,B39,C10,C5 |
Chr8:195533 |
A |
AC |
1bp_insertion | frameshift_variant | 28 | A13,A25,A4,A5,B103,B108,B112,B33,B36,B50,B60,B67,B72,B73,B76,B86,B93,C14,C15,C30,C35,C48,C50,C59,C68,C69,C75,C83 |
Chr8:195540 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B100,B40,B53,C20 |
Chr8:195542 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B108,B109,B15,B46,C15 |
Chr8:195561 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C10,C5 |
Chr8:195571 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B104,B119 |
Chr8:195579 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A21,C24,D7 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057781235.1PF18052
Rx_N 5-87 aa
PF00931
NB-ARC 175-343 aa
PF13401
AAA_22 190-282 aa
PF23559
WHD_DRP 430-507 aa
PF23598
LRR_14 581-883 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781235.1 |
Pfam | PF18052 |
Rx_N | Domain | 5 | 87 | 9.1e-17 | 61.7 | Rx N-terminal domain |
XP_057781235.1 |
Pfam | PF00931 |
NB-ARC | Domain | 175 | 343 | 6.3e-40 | 137.3 | NB-ARC domain |
XP_057781235.1 |
Pfam | PF13401 |
AAA_22 | Domain | 190 | 282 | 1e-07 | 33.0 | AAA domain |
XP_057781235.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 430 | 507 | 1.4e-11 | 45.0 | Disease resistance protein Winged helix domain |
XP_057781235.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 581 | 883 | 2.3e-24 | 86.5 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。