当前解析结果
SmilChr08G000032| 统一新 Gene ID | SmilChr08G000032 |
|---|---|
| 名称 | SmilChr08G000032 |
| 描述 | probable disease resistance protein At1g58602 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 199854 - 223573 / + |
| NCBI Gene ID | LOC130999656 |
|---|---|
| GeneID | 130999656 |
| locus_tag | - |
| NCBI Name | LOC130999656 |
| 原始查询 | SmilChr08G000032 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable disease resistance protein At1g58602 |
| 产物 | probable disease resistance protein At1g58602 |
| Arabidopsis | AT1G58390 (AT1G58390)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:842208] identity=32.2; qcov=1.02; evalue=2.56e-128; confidence=low |
| Rice | Os09g0479500- identity=26.9; qcov=1.04; evalue=1.37e-72; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF13191 (AAA_16); PF18052 (Rx_N); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999656 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057781236.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057781236.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057781236.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057781236.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057781236.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:220428 |
AAG |
A |
2bp_deletion | frameshift_variant | 2 | B16,C9 |
Chr8:220428 |
AAG |
A |
2bp_deletion | CDS_variant | 2 | B16,C9 |
Chr8:220464 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B112,B42 |
Chr8:220466 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B42 |
Chr8:220481 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B129,B131,B50,C45 |
Chr8:220523 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A1,B72 |
Chr8:220562 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B20,B31,C75 |
Chr8:220564 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B20,B31,C75 |
Chr8:220671 |
GGC |
G |
2bp_deletion | frameshift_variant | 1 | A22 |
Chr8:220671 |
GGC |
G |
2bp_deletion | CDS_variant | 1 | A22 |
Chr8:220691 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B40,C3 |
Chr8:220699 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B40,C3 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057781236.1PF18052
Rx_N 5-86 aa
PF13191
AAA_16 168-278 aa
PF00931
NB-ARC 173-338 aa
PF23559
WHD_DRP 426-503 aa
PF23598
LRR_14 563-877 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781236.1 |
Pfam | PF18052 |
Rx_N | Domain | 5 | 86 | 2.5e-17 | 63.4 | Rx N-terminal domain |
XP_057781236.1 |
Pfam | PF13191 |
AAA_16 | Domain | 168 | 278 | 1.7e-08 | 35.9 | AAA ATPase domain |
XP_057781236.1 |
Pfam | PF00931 |
NB-ARC | Domain | 173 | 338 | 8e-37 | 127.2 | NB-ARC domain |
XP_057781236.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 426 | 503 | 3.2e-11 | 43.8 | Disease resistance protein Winged helix domain |
XP_057781236.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 563 | 877 | 9.8e-24 | 84.5 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。