当前解析结果
SmilChr08G000035| 统一新 Gene ID | SmilChr08G000035 |
|---|---|
| 名称 | SmilChr08G000035 |
| 描述 | putative disease resistance protein At1g50180 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 248137 - 250766 / + |
| NCBI Gene ID | LOC130996982 |
|---|---|
| GeneID | 130996982 |
| locus_tag | - |
| NCBI Name | LOC130996982 |
| 原始查询 | SmilChr08G000035 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative disease resistance protein At1g50180 |
| 产物 | putative disease resistance protein At1g50180 |
| Arabidopsis | AT1G50180 (AT1G50180)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:841440] identity=36.1; qcov=0.85; evalue=3.77e-101; confidence=medium |
| Rice | Os11g0633500- identity=30.3; qcov=0.678; evalue=3.58e-61; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF13401 (AAA_22); PF18052 (Rx_N); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130996982 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057778246.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057778246.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057778246.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057778246.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057778246.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:248214 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
Chr8:248243 |
G |
A |
EMS_canonical_SNV | stop_gained | 35 | A10,A6,B105,B128,B129,B134,B138,B22,B26,B34,B35,B36,B37,B5,B52,B6,B62,B66,B72,B76,B82,B9,B91,B95,C1,C19,C28,C34,C36,C37,C56,C58,C67,C80,D3 |
Chr8:248280 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr8:248424 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B100,B31,B47 |
Chr8:248465 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A7,B35,B59,B89,C84 |
Chr8:248466 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A7,B35,B59,B89,C84 |
Chr8:248487 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A7,B35,B59,B89,C84 |
Chr8:248505 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B104,D11 |
Chr8:248562 |
CA |
C |
1bp_deletion | frameshift_variant | 2 | A14,B1 |
Chr8:248562 |
CA |
C |
1bp_deletion | CDS_variant | 2 | A14,B1 |
Chr8:248577 |
AG |
A |
1bp_deletion | frameshift_variant | 2 | B14,B96 |
Chr8:248577 |
AG |
A |
1bp_deletion | CDS_variant | 2 | B14,B96 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057778246.1PF18052
Rx_N 5-88 aa
PF00931
NB-ARC 176-336 aa
PF13401
AAA_22 189-276 aa
PF23559
WHD_DRP 425-503 aa
PF23598
LRR_14 564-774 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057778246.1 |
Pfam | PF18052 |
Rx_N | Domain | 5 | 88 | 5.9e-16 | 59.1 | Rx N-terminal domain |
XP_057778246.1 |
Pfam | PF00931 |
NB-ARC | Domain | 176 | 336 | 9.6e-35 | 120.4 | NB-ARC domain |
XP_057778246.1 |
Pfam | PF13401 |
AAA_22 | Domain | 189 | 276 | 1.1e-07 | 32.9 | AAA domain |
XP_057778246.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 425 | 503 | 1.8e-13 | 51.0 | Disease resistance protein Winged helix domain |
XP_057778246.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 564 | 774 | 7.6e-18 | 65.1 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。