当前解析结果
SmilChr08G000040| 统一新 Gene ID | SmilChr08G000040 |
|---|---|
| 名称 | SmilChr08G000040 |
| 描述 | outer envelope pore protein 37, chloroplastic |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 267915 - 270952 / + |
| NCBI Gene ID | LOC130999666 |
|---|---|
| GeneID | 130999666 |
| locus_tag | - |
| NCBI Name | LOC130999666 |
| 原始查询 | SmilChr08G000040 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | outer envelope pore protein 37, chloroplastic |
| 产物 | outer envelope pore protein 37%2C chloroplastic |
| Arabidopsis | AT2G43950 (OEP37)chloroplast outer envelope protein 37 [Source:NCBI gene (formerly Entrezgene);Acc:819000] identity=69; qcov=0.916; evalue=4.73e-146; confidence=high |
| Rice | Os02g0608900- identity=54.4; qcov=0.963; evalue=9.61e-117; confidence=high |
| GO | GO:0005216 (monoatomic ion channel activity); GO:0006812 (monoatomic cation transport); GO:0009707 (chloroplast outer membrane) |
| KEGG | - |
| Pfam | PF28611 (OEP37) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999666 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057781253.1 |
| 2 | Chloroplast membrane | 叶绿体膜 | 1.00000 | XP_057781253.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057781253.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057781253.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057781253.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:268095 |
A |
AT |
1bp_insertion | frameshift_variant | 1 | C7 |
Chr8:268095 |
A |
AT |
1bp_insertion | CDS_variant | 1 | C7 |
Chr8:268096 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | B76 |
Chr8:268096 |
TG |
T |
1bp_deletion | CDS_variant | 1 | B76 |
Chr8:268142 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D4 |
Chr8:268148 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B12,B55 |
Chr8:268171 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B38,B39,B71,C62 |
Chr8:268177 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B37,B40,B53,B77 |
Chr8:268180 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B124 |
Chr8:268297 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B75 |
Chr8:268298 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B12,B55 |
Chr8:268319 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C78 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057781253.1PF28611
OEP37 32-321 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781253.1 |
Pfam | PF28611 |
OEP37 | Family | 32 | 321 | 2.4e-153 | 510.0 | Outer envelope pore protein 37 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。