Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000051`

染色体: Chr08 坐标: 310824-314636 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000051`
名称	SmilChr08G000051
描述	probable disease resistance protein At1g58602
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	310824 - 314636 / `-`

ID 对照

NCBI Gene ID	`LOC130999675`
GeneID	`130999675`
locus_tag	`-`
NCBI Name	`LOC130999675`
原始查询	`SmilChr08G000051`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable disease resistance protein At1g58602
产物	probable disease resistance protein At1g58602
Arabidopsis	`AT5G43470` (RPP8) Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:834367] identity=32.4; qcov=1.03; evalue=2.1e-132; confidence=low
Rice	`Os09g0479500` - identity=26; qcov=1; evalue=5.11e-76; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF13191 (AAA_16); PF18052 (Rx_N); PF23559 (WHD_DRP); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:130999675

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057781263.1`
2	Nucleus	细胞核	0.00000	`XP_057781263.1`
3	Chromosome	染色体	0.00000	`XP_057781263.1`
4	Centromere	着丝粒	0.00000	`XP_057781263.1`
5	Chromatin	染色质	0.00000	`XP_057781263.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:311545`	`T`	`TA`	1bp_insertion	frameshift_variant	73	A16,A20,A22,B1,B101,B102,B108,B109,B111,B115,B123,B131,B132,B135,B138,B22,B23,B26,B28,B30,B32,B35,B36,B37,B4,B48,B52,B53,B54,B57,B6,B63,B7,B74,B77,B80,B81,B82,B84,B87,B89,B94,B99,C13,C17,C19,C25,C26,C28,C29,C3,C31,C37,C4,C41,C43,C48,C49,C5,C58,C59,C60,C65,C67,C7,C73,C76,C77,C80,C84,C9,D4,D8
`Chr8:311573`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B119,B123,C54
`Chr8:311577`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B118,B13,B45,B81,C82
`Chr8:311586`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B10,B61,B93
`Chr8:311594`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B25
`Chr8:311600`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B64,B75,C1,D4
`Chr8:311611`	`AC`	`A`	1bp_deletion	frameshift_variant	1	B25
`Chr8:311611`	`AC`	`A`	1bp_deletion	CDS_variant	1	B25
`Chr8:311629`	`GC`	`G`	1bp_deletion	frameshift_variant	22	A14,A15,A2,A25,B10,B106,B137,B18,B60,B61,B82,B93,B98,C33,C39,C40,C72,C74,C82,C84,D6,D9
`Chr8:311631`	`C`	`CAT`	2bp_insertion	frameshift_variant	27	A10,A3,A4,A9,B1,B126,B135,B17,B40,B50,B53,B68,B71,B80,B89,B94,C1,C10,C18,C26,C33,C46,C65,C69,C81,D6,D9
`Chr8:311634`	`TCC`	`T`	2bp_deletion	frameshift_variant	28	A10,A3,A4,A9,B1,B126,B135,B17,B40,B41,B50,B53,B68,B71,B80,B89,B94,C1,C10,C18,C26,C33,C46,C65,C69,C81,D6,D9
`Chr8:311640`	`A`	`AG`	1bp_insertion	frameshift_variant	15	A8,A9,B124,B128,B2,B49,B86,B97,C27,C34,C54,C62,C7,D3,D5

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781263.1

931 aa

466

931

Rx_N

AAA_16

NB-ARC

WHD_DRP

LRR_14

PF18052 Rx_N 5-88 aa PF13191 AAA_16 168-262 aa PF00931 NB-ARC 172-337 aa PF23559 WHD_DRP 424-501 aa PF23598 LRR_14 566-882 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781263.1`	Pfam	`PF18052`	Rx_N	Domain	5	88	9.3e-18	64.8	Rx N-terminal domain
`XP_057781263.1`	Pfam	`PF13191`	AAA_16	Domain	168	262	4.2e-09	37.9	AAA ATPase domain
`XP_057781263.1`	Pfam	`PF00931`	NB-ARC	Domain	172	337	1.7e-37	129.4	NB-ARC domain
`XP_057781263.1`	Pfam	`PF23559`	WHD_DRP	Domain	424	501	1.3e-12	48.3	Disease resistance protein Winged helix domain
`XP_057781263.1`	Pfam	`PF23598`	LRR_14	Repeat	566	882	3.3e-24	86.0	Leucine-rich repeat region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XR_009093561.1
CGACCACAGCTTCCTTATCTTTTCTAATTAACTTCCATCGATCTCACCACTGCCAAATTCAAGAGTGCTCAACCAATCACTTTGACCAAATATATCTGAGCTTCCCCAAATCAGCAAATCAAGAGTGTTCCACCAATCAATTAGACCAAATGGCAGAAGCAGTGGTGTCGATGGCTCTAGAAACCTTGCGCGATTTGTTGTTGGAAGAAGCAAGGTTTTTATATGGTGTGAGCGATGAAGTGAAGGAGCTCGAGATCCAG...

XR_009093562.1
CGACCACAGCTTCCTTATCTTTTCTAATTAACTTCCATCGATCTCACCACTGCCAAATTCAAGAGTGCTCAACCAATCACTTTGACCAAATATATCTGAGCTTCCCCAAATCAGCAAATCAAGAGTGTTCCACCAATCAATTAGACCAAATGGCAGAAGCAGTGGTGTCGATGGCTCTAGAAACCTTGCGCGATTTGTTGTTGGAAGAAGCAAGGTTTTTATATGGTGTGAGCGATGAAGTGAAGGAGCTCGAGATCCAG...

CDS

1 records

下载 CDS FASTA

LOC130999675
ATGGCAGAAGCAGTGGTGTCGATGGCTCTAGAAACCTTGCGCGATTTGTTGTTGGAAGAAGCAAGGTTTTTATATGGTGTGAGCGATGAAGTGAAGGAGCTCGAGATCCAGCTCAAAGAGATGAAGTGTCTGCTTAAAGATGCCGATAGAAGACGACATGAAAGCGAAACCATTTTGAATTGGATCTCGGAGATCAAAGATCTTGTGTACAGAGCAGAAGCTGCCATTGAAAGACACGCAGCTTATCAAGTGTTGGCAAG...

Protein

1 records

下载 Protein FASTA

XP_057781263.1
MAEAVVSMALETLRDLLLEEARFLYGVSDEVKELEIQLKEMKCLLKDADRRRHESETILNWISEIKDLVYRAEAAIERHAAYQVLARRRRGLRQLVRRCSCSLEEGYSLHQLGSEISPIKSRLERINKEMIESGIKKSIINNTDGGESSSANNRARKSFPEFEIGDCFVGMEDELKQLRNLLRQDNEDRVISVWGMGGSGKTTIAKKLYNETNTSFDLSAWVCITQQCQGFQSVWEDVLKQLDPQIKEDLNLNQSQLKER...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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