Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000052`

染色体: Chr08 坐标: 316093-319477 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000052`
名称	SmilChr08G000052
描述	thiocyanate methyltransferase 1-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	316093 - 319477 / `+`

ID 对照

NCBI Gene ID	`LOC130999677`
GeneID	`130999677`
locus_tag	`-`
NCBI Name	`LOC130999677`
原始查询	`SmilChr08G000052`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	thiocyanate methyltransferase 1-like
产物	thiocyanate methyltransferase 1-like
Arabidopsis	`AT2G43940` (HOL3) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818998] identity=57.8; qcov=0.832; evalue=1.4e-91; confidence=high
Rice	`Os06g0153900` (OsHOL2) - identity=55.6; qcov=0.836; evalue=5.56e-87; confidence=high
GO	GO:0008757 (S-adenosylmethionine-dependent methyltransferase activity)
KEGG	-
Pfam	PF05724 (TPMT); PF08241 (Methyltransf_11); PF08242 (Methyltransf_12); PF13649 (Methyltransf_25); PF13847 (Methyltransf_31)
InterPro	-
eggNOG	-
NR	GeneID:130999677

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057781267.1`
2	Nucleus	细胞核	0.80000	`XP_057781268.1`
3	Chromosome	染色体	0.00000	`XP_057781267.1`
4	Centromere	着丝粒	0.00000	`XP_057781267.1`
5	Chromatin	染色质	0.00000	`XP_057781267.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:316546`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B105,B90
`Chr8:316581`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B117
`Chr8:316788`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B25
`Chr8:316804`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C24
`Chr8:316817`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C48
`Chr8:316822`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B38,B39,B61,B8,C4
`Chr8:317848`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:318316`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B108,B109,B128,C37,C84
`Chr8:318344`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:318492`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B60,B64,B95,C1
`Chr8:318530`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A11,B107,B98,C50,C79
`Chr8:318531`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B5

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781267.1

299 aa

150

299

TPMT

Methyltransf_11

Methyltransf_31

Methyltransf_25

Methyltransf_12

PF05724 TPMT 57-230 aa PF08241 Methyltransf_11 97-192 aa PF13847 Methyltransf_31 97-193 aa PF13649 Methyltransf_25 98-189 aa PF08242 Methyltransf_12 98-191 aa

XP_057781268.1

256 aa

128

256

TPMT

Methyltransf_11

Methyltransf_31

Methyltransf_25

Methyltransf_12

PF05724 TPMT 57-230 aa PF08241 Methyltransf_11 97-192 aa PF13847 Methyltransf_31 97-193 aa PF13649 Methyltransf_25 98-189 aa PF08242 Methyltransf_12 98-191 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781267.1`	Pfam	`PF05724`	TPMT	Family	57	230	1.3e-45	156.4	Thiopurine S-methyltransferase (TPMT)
`XP_057781267.1`	Pfam	`PF08241`	Methyltransf_11	Domain	97	192	3.2e-09	38.0	Methyltransferase domain
`XP_057781267.1`	Pfam	`PF13847`	Methyltransf_31	Domain	97	193	2.2e-11	44.5	Methyltransferase domain
`XP_057781267.1`	Pfam	`PF13649`	Methyltransf_25	Domain	98	189	2.7e-12	47.9	Methyltransferase domain
`XP_057781267.1`	Pfam	`PF08242`	Methyltransf_12	Domain	98	191	2.3e-11	45.0	Methyltransferase domain
`XP_057781268.1`	Pfam	`PF05724`	TPMT	Family	57	230	4.8e-46	157.9	Thiopurine S-methyltransferase (TPMT)
`XP_057781268.1`	Pfam	`PF08241`	Methyltransf_11	Domain	97	192	3e-09	38.1	Methyltransferase domain
`XP_057781268.1`	Pfam	`PF13847`	Methyltransf_31	Domain	97	193	1.5e-11	45.0	Methyltransferase domain
`XP_057781268.1`	Pfam	`PF13649`	Methyltransf_25	Domain	98	189	4.5e-12	47.2	Methyltransferase domain
`XP_057781268.1`	Pfam	`PF08242`	Methyltransf_12	Domain	98	191	2.6e-11	44.8	Methyltransferase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XR_009093563.1
AAACAAAATTTCTAAATTAAGTCAACCAATCTTTCTTCTTCAATTCGAAAACCTCAAAGTCAACCTTCCCAAAACCCCCAATGCGATTTTCCCTCATTCCCAAATTCTACTATTCACCTGCACTTCGACTTCTCCCACCTTACTACCGTTCAATTCGCTTCAACGATATGTCAACTGATTTACCGGAACCAAAACCCCCAATCACTGCTGCTGAGAAGGTCAAGAAATTTCAAGAAGTTTTTCACTCTACCAATAGTTGG...

XM_057925285.1
AATACATGTATACTTTTGTTATAAAATAATAATAATAATAATAATAATATATACAAGAAAATTAACAAATTTATGATATTTTTTTTGTTAATAATAACCTCTAAAAATATAATTTTATGGTATTATATTTTATTGTGTTATTTAATTTGTTATTAATAAAAGTATCTTTTATTACTGGGACGATTAAACCTGACAAGAAACCGCTCATAATTTATGATTTTATCATCCAGCAAAAAATAAAATTAAACAAAATTTCTAAA...

CDS

2 records

下载 CDS FASTA

LOC130999677
ATGCGATTTTCCCTCATTCCCAAATTCTACTATTCACCTGCACTTCGACTTCTCCCACCTTACTACCGTTCAATTCGCTTCAACGATATGTCAACTGATTTACCGGAACCAAAACCCCCAATCACTGCTGCTGAGAAGGTCAAGAAATTTCAAGAAGTTTTTCACTCTACCAATAGTTGGGACAAATGCTGGGACGAAGGTCTGACGCCTTGGGATTTGGGGAGCCCTACCCCAGTTCTTGTGCACCTTCACAACACTGG...

Protein

2 records

下载 Protein FASTA

XP_057781267.1
MRFSLIPKFYYSPALRLLPPYYRSIRFNDMSTDLPEPKPPITAAEKVKKFQEVFHSTNSWDKCWDEGLTPWDLGSPTPVLVHLHNTGSLPKGRALVPGCGSGYDVVAIACAECHVVGLDVSDNAIKKAMELMSGSPKAEHCTFLKTDFFTWCPDQPFDLIFDYTFFCAIEPELRSLWAKKISDLLKPDGELITLMYPIDDHEGGPPFKVSVADYEEALHPVGFEAMDISENELAIAPRKVNRLRVESLACCLDGVWLRFI...

XP_057781268.1
MRFSLIPKFYYSPALRLLPPYYRSIRFNDMSTDLPEPKPPITAAEKVKKFQEVFHSTNSWDKCWDEGLTPWDLGSPTPVLVHLHNTGSLPKGRALVPGCGSGYDVVAIACAECHVVGLDVSDNAIKKAMELMSGSPKAEHCTFLKTDFFTWCPDQPFDLIFDYTFFCAIEPELRSLWAKKISDLLKPDGELITLMYPIDDHEGGPPFKVSVADYEEALHPVGFEAMDISENELAIAPRKGREKLGRWRRSLRHASL

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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