Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000053`

染色体: Chr08 坐标: 319343-326729 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000053`
名称	SmilChr08G000053
描述	type I inositol polyphosphate 5-phosphatase 12-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	319343 - 326729 / `+`

ID 对照

NCBI Gene ID	`LOC130999676`
GeneID	`130999676`
locus_tag	`-`
NCBI Name	`LOC130999676`
原始查询	`SmilChr08G000053`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	type I inositol polyphosphate 5-phosphatase 12-like
产物	type I inositol polyphosphate 5-phosphatase 12-like
Arabidopsis	`AT1G05630` (5PTASE13) Endonuclease/exonuclease/phosphatase family protein [Source:NCBI gene (formerly Entrezgene);Acc:837069] identity=63; qcov=1; evalue=0; confidence=high
Rice	`Os09g0500300` - identity=55.3; qcov=1.02; evalue=0; confidence=high
GO	GO:0005515 (protein binding); GO:0016791 (phosphatase activity); GO:0046856 (phosphatidylinositol dephosphorylation)
KEGG	-
Pfam	PF22669 (Exo_endo_phos2); PF23754 (Beta-prop_IP5PC_F); PF23755 (Ig-like_IP5PC_F)
InterPro	-
eggNOG	-
NR	GeneID:130999676

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057781264.1`
2	Cytoplasm	细胞质	0.60000	`XP_057781264.1`
3	Golgi apparatus	高尔基体	0.60000	`XP_057781266.1`
4	Trans-golgi network	Trans-golgi network	0.60000	`XP_057781266.1`
5	Vesicle	囊泡	0.40000	`XP_057781266.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:319975`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C13
`Chr8:319987`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B117,B29,C35
`Chr8:320032`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B121,B4,B44,C63
`Chr8:320042`	`C`	`T`	EMS_canonical_SNV	stop_gained	7	A3,B121,B4,B44,B75,C63,C85
`Chr8:320053`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C52,C64
`Chr8:320080`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B40,B53,B77,C13
`Chr8:320088`	`A`	`AC`	1bp_insertion	frameshift_variant	1	B44
`Chr8:320088`	`A`	`AC`	1bp_insertion	CDS_variant	1	B44
`Chr8:320107`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B137,C52,C64
`Chr8:320213`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B40,B53,B77
`Chr8:320269`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B122,B14,B15,C38
`Chr8:320290`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A7,D2

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781264.1

1150 aa

575

1150

Beta-prop_IP5PC_F

Exo_endo_phos2

Ig-like_IP5PC_F

PF23754 Beta-prop_IP5PC_F 150-542 aa PF22669 Exo_endo_phos2 576-947 aa PF23755 Ig-like_IP5PC_F 986-1121 aa

XP_057781265.1

1116 aa

558

1116

Beta-prop_IP5PC_F

Exo_endo_phos2

Ig-like_IP5PC_F

PF23754 Beta-prop_IP5PC_F 150-542 aa PF22669 Exo_endo_phos2 576-913 aa PF23755 Ig-like_IP5PC_F 952-1087 aa

XP_057781266.1

929 aa

464

929

Beta-prop_IP5PC_F

Exo_endo_phos2

Ig-like_IP5PC_F

PF23754 Beta-prop_IP5PC_F 1-321 aa PF22669 Exo_endo_phos2 355-726 aa PF23755 Ig-like_IP5PC_F 765-900 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781264.1`	Pfam	`PF23754`	Beta-prop_IP5PC_F	Repeat	150	542	9.8e-207	687.2	IP5P C-F beta-propeller
`XP_057781264.1`	Pfam	`PF22669`	Exo_endo_phos2	Domain	576	947	8.6e-66	223.1	Endonuclease/Exonuclease/phosphatase family 2
`XP_057781264.1`	Pfam	`PF23755`	Ig-like_IP5PC_F	Domain	986	1121	9.8e-62	207.5	IP5P C-F Ig-like domain
`XP_057781265.1`	Pfam	`PF23754`	Beta-prop_IP5PC_F	Repeat	150	542	9.3e-207	687.2	IP5P C-F beta-propeller
`XP_057781265.1`	Pfam	`PF22669`	Exo_endo_phos2	Domain	576	913	1.2e-67	229.2	Endonuclease/Exonuclease/phosphatase family 2
`XP_057781265.1`	Pfam	`PF23755`	Ig-like_IP5PC_F	Domain	952	1087	1e-61	207.4	IP5P C-F Ig-like domain
`XP_057781266.1`	Pfam	`PF23754`	Beta-prop_IP5PC_F	Repeat	1	321	2.5e-175	583.8	IP5P C-F beta-propeller
`XP_057781266.1`	Pfam	`PF22669`	Exo_endo_phos2	Domain	355	726	5.1e-66	223.8	Endonuclease/Exonuclease/phosphatase family 2
`XP_057781266.1`	Pfam	`PF23755`	Ig-like_IP5PC_F	Domain	765	900	7e-62	207.9	IP5P C-F Ig-like domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057925283.1
GTAATCCGCAGTCACTACATTCGATTCACCTGCAAACTACACAAGATAGAATGGAAAATTCATAAAGACGATTGCCAGCACAGACACGCAGCTGTGGGCGGGGCAGGAATCTGGTGTAAGAGTGTGGAAGTATTCAGACACATTCGACCCGGGGTCCTTCACGGGGACAGCAGGGCGAAGGCTACCAAGAGGAGACGAGGAGACAGCCACGTTTCACGAGTCAGCAAGCACGTCTCAGACACTCTGCTTGATGGTCGATG...

XM_057925281.1
ATAGTAATATAATTATAGTACAGAATAATTATAATTATAATAAATATTAGACTACAGTCTCAGTTTTAAAACGAAACCACCTTGTCCTAACATTCCCAAAATCTTTCGCCTTCTTAACCGCCAACTAACTACCTCTCTCTCTCTCTCTATTTTTGTTTCTCTCTCCTCAACATTCTGACTCTTTCTTTCTCCTCCCCACATTCACTCTCCCTCCCAAATTTTCCCACAATGCTCAACTTCTCTCCTCTTTCCCATCTCCC...

CDS

3 records

下载 CDS FASTA

LOC130999676
ATGGATGATCGCCCCAAAGATCCCGACATCAAGGCGCTGGAGGCGCTATCCAACTCGCCGCCGCGCCGGAAAACCCACTCCTACAGCCAGCAGCTGCGGACGATGACCGGCGGCCACCACCCCCGCCACGCGAACCACCCCCGCAACCACAGCCTCGACGAGATCGACATCCTCGGAGGCGGCGGCAGCGGTGGCGAGGGCGCCGACGACGAGGAAGACTTCTACCGCTATCCCATCACAACCGGGAGCGTCGGCGGCGC...

Protein

3 records

下载 Protein FASTA

XP_057781264.1
MDDRPKDPDIKALEALSNSPPRRKTHSYSQQLRTMTGGHHPRHANHPRNHSLDEIDILGGGGSGGEGADDEEDFYRYPITTGSVGGAVDMMDYVGMGEGGNGFDDSQLLPYQPLPEFMGSGGGVGVFKAPTRAAMHPNRPPCLEIRPHPLRESQNGKFIKTIASTDTQLWAGQESGVRVWKYSDTFDPGSFTGTAGRRLPRGDEETATFHESASTSQTLCLMVDEGSKLVWSGHKDGKVRSWKMEQQFTDGNAFKEGFSW...

XP_057781265.1
MDDRPKDPDIKALEALSNSPPRRKTHSYSQQLRTMTGGHHPRHANHPRNHSLDEIDILGGGGSGGEGADDEEDFYRYPITTGSVGGAVDMMDYVGMGEGGNGFDDSQLLPYQPLPEFMGSGGGVGVFKAPTRAAMHPNRPPCLEIRPHPLRESQNGKFIKTIASTDTQLWAGQESGVRVWKYSDTFDPGSFTGTAGRRLPRGDEETATFHESASTSQTLCLMVDEGSKLVWSGHKDGKVRSWKMEQQFTDGNAFKEGFSW...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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