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TF 结合位点 TF 靶基因 EMS 突变
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中文 EN
同源 qcov 为最佳单个 HSP 在查询序列上的坐标跨度／序列长度；置信度是规则分级，不是已验证的正交关系。

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及有 accession 序列支持的文献基因名查询；未闭环名称仅提供候选导航。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G000056

染色体: Chr08 坐标: 337292-339331 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G000056
名称SmilChr08G000056
描述pentatricopeptide repeat-containing protein At1g12300, mitochondrial-like
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向337292 - 339331 / -

ID 对照

NCBI Gene IDLOC130999680
GeneID130999680
locus_tag-
NCBI NameLOC130999680
原始查询SmilChr08G000056

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At1g12300, mitochondrial-like
产物pentatricopeptide repeat-containing protein At1g12300%2C mitochondrial-like
ArabidopsisAT1G12300 (AT1G12300)
Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837784]
identity=38.12; qcov=0.882; evalue=1.49e-133; confidence=medium
RiceOs10g0495200 (Rf4)
-
identity=31.9; qcov=0.958; evalue=1.52e-93; confidence=low
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:130999680

打开注释模块

非零投票定位候选（最多五项）

Rank定位位置中文五折投票比例Protein ID
1 Mitochondrion 线粒体 0.80000 XP_057781270.1
2 Chloroplast 叶绿体 0.20000 XP_057781270.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:337472 G A EMS_canonical_SNV CDS_variant 3 B22,C9,D8
Chr8:337513 G A EMS_canonical_SNV CDS_variant 1 B85
Chr8:337570 C T EMS_canonical_SNV CDS_variant 4 A22,A7,B35,C76
Chr8:337579 C T EMS_canonical_SNV CDS_variant 2 B118,B81
Chr8:337580 G A EMS_canonical_SNV CDS_variant 1 B91
Chr8:337587 C T EMS_canonical_SNV CDS_variant 1 B91
Chr8:337672 C T EMS_canonical_SNV CDS_variant 1 B122
Chr8:337683 C T EMS_canonical_SNV CDS_variant 5 A11,B102,B107,B98,C79
Chr8:337749 CAT C 2bp_deletion frameshift_variant 6 B106,B13,B140,B53,B57,B91
Chr8:337755 G A EMS_canonical_SNV CDS_variant 1 B58
Chr8:337758 T TAC 2bp_insertion frameshift_variant 7 B106,B13,B140,B30,B53,B57,B91
Chr8:337762 C T EMS_canonical_SNV CDS_variant 1 B58

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781270.1
600 aa
N
1
300
600
PPR_2
PPR
PPR_3
PPR_1
PPR
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_long
TPR_24
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
TPR_24
PPR_1
PPR
PPR_2
PPR_3
PPR_1
PPR_2
PPR
TPR_24
PPR_1
PPR_2
PPR
PPR
C
PF13041 PPR_2 76-122 aa PF01535 PPR 78-107 aa PF13812 PPR_3 98-154 aa PF12854 PPR_1 140-171 aa PF01535 PPR 148-176 aa PF01535 PPR 187-211 aa PF13812 PPR_3 204-260 aa PF12854 PPR_1 213-243 aa PF13041 PPR_2 215-264 aa PF01535 PPR 219-248 aa PF12854 PPR_1 246-278 aa PF13041 PPR_2 250-299 aa PF01535 PPR 253-282 aa PF13812 PPR_3 274-331 aa PF17177 PPR_long 274-374 aa PF23276 TPR_24 278-377 aa PF12854 PPR_1 282-314 aa PF13041 PPR_2 286-333 aa PF01535 PPR 288-318 aa PF12854 PPR_1 316-349 aa PF13041 PPR_2 320-360 aa PF01535 PPR 323-353 aa PF13812 PPR_3 344-400 aa PF12854 PPR_1 351-380 aa PF13041 PPR_2 355-402 aa PF01535 PPR 358-387 aa PF12854 PPR_1 386-418 aa PF13041 PPR_2 391-439 aa PF01535 PPR 394-421 aa PF13812 PPR_3 413-470 aa PF23276 TPR_24 420-516 aa PF12854 PPR_1 422-450 aa PF01535 PPR 428-458 aa PF13041 PPR_2 429-474 aa PF13812 PPR_3 453-507 aa PF12854 PPR_1 456-487 aa PF13041 PPR_2 460-497 aa PF01535 PPR 463-493 aa PF23276 TPR_24 468-575 aa PF12854 PPR_1 491-524 aa PF13041 PPR_2 495-542 aa PF01535 PPR 499-528 aa PF01535 PPR 534-563 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057781270.1 Pfam PF13041 PPR_2 Repeat 76 122 2.7e-153 498.7 PPR repeat family
XP_057781270.1 Pfam PF01535 PPR Repeat 78 107 1e-96 311.4 PPR repeat
XP_057781270.1 Pfam PF13812 PPR_3 Repeat 98 154 3.6e-64 213.5 Pentatricopeptide repeat domain
XP_057781270.1 Pfam PF12854 PPR_1 Repeat 140 171 3.3e-120 392.2 PPR repeat
XP_057781270.1 Pfam PF01535 PPR Repeat 148 176 1e-96 311.4 PPR repeat
XP_057781270.1 Pfam PF01535 PPR Repeat 187 211 1e-96 311.4 PPR repeat
XP_057781270.1 Pfam PF13812 PPR_3 Repeat 204 260 3.6e-64 213.5 Pentatricopeptide repeat domain
XP_057781270.1 Pfam PF12854 PPR_1 Repeat 213 243 3.3e-120 392.2 PPR repeat
XP_057781270.1 Pfam PF13041 PPR_2 Repeat 215 264 2.7e-153 498.7 PPR repeat family
XP_057781270.1 Pfam PF01535 PPR Repeat 219 248 1e-96 311.4 PPR repeat
XP_057781270.1 Pfam PF12854 PPR_1 Repeat 246 278 3.3e-120 392.2 PPR repeat
XP_057781270.1 Pfam PF13041 PPR_2 Repeat 250 299 2.7e-153 498.7 PPR repeat family
XP_057781270.1 Pfam PF01535 PPR Repeat 253 282 1e-96 311.4 PPR repeat
XP_057781270.1 Pfam PF13812 PPR_3 Repeat 274 331 3.6e-64 213.5 Pentatricopeptide repeat domain
XP_057781270.1 Pfam PF17177 PPR_long Repeat 274 374 4.3e-33 115.2 Pentacotripeptide-repeat region of PRORP
XP_057781270.1 Pfam PF23276 TPR_24 Repeat 278 377 6.2e-34 117.5 Pentatricopeptide repeat-containing protein
XP_057781270.1 Pfam PF12854 PPR_1 Repeat 282 314 3.3e-120 392.2 PPR repeat
XP_057781270.1 Pfam PF13041 PPR_2 Repeat 286 333 2.7e-153 498.7 PPR repeat family
XP_057781270.1 Pfam PF01535 PPR Repeat 288 318 1e-96 311.4 PPR repeat
XP_057781270.1 Pfam PF12854 PPR_1 Repeat 316 349 3.3e-120 392.2 PPR repeat
XP_057781270.1 Pfam PF13041 PPR_2 Repeat 320 360 2.7e-153 498.7 PPR repeat family
XP_057781270.1 Pfam PF01535 PPR Repeat 323 353 1e-96 311.4 PPR repeat
XP_057781270.1 Pfam PF13812 PPR_3 Repeat 344 400 3.6e-64 213.5 Pentatricopeptide repeat domain
XP_057781270.1 Pfam PF12854 PPR_1 Repeat 351 380 3.3e-120 392.2 PPR repeat
XP_057781270.1 Pfam PF13041 PPR_2 Repeat 355 402 2.7e-153 498.7 PPR repeat family
XP_057781270.1 Pfam PF01535 PPR Repeat 358 387 1e-96 311.4 PPR repeat
XP_057781270.1 Pfam PF12854 PPR_1 Repeat 386 418 3.3e-120 392.2 PPR repeat
XP_057781270.1 Pfam PF13041 PPR_2 Repeat 391 439 2.7e-153 498.7 PPR repeat family
XP_057781270.1 Pfam PF01535 PPR Repeat 394 421 1e-96 311.4 PPR repeat
XP_057781270.1 Pfam PF13812 PPR_3 Repeat 413 470 3.6e-64 213.5 Pentatricopeptide repeat domain
XP_057781270.1 Pfam PF23276 TPR_24 Repeat 420 516 6.2e-34 117.5 Pentatricopeptide repeat-containing protein
XP_057781270.1 Pfam PF12854 PPR_1 Repeat 422 450 3.3e-120 392.2 PPR repeat
XP_057781270.1 Pfam PF01535 PPR Repeat 428 458 1e-96 311.4 PPR repeat
XP_057781270.1 Pfam PF13041 PPR_2 Repeat 429 474 2.7e-153 498.7 PPR repeat family
XP_057781270.1 Pfam PF13812 PPR_3 Repeat 453 507 3.6e-64 213.5 Pentatricopeptide repeat domain
XP_057781270.1 Pfam PF12854 PPR_1 Repeat 456 487 3.3e-120 392.2 PPR repeat
XP_057781270.1 Pfam PF13041 PPR_2 Repeat 460 497 2.7e-153 498.7 PPR repeat family
XP_057781270.1 Pfam PF01535 PPR Repeat 463 493 1e-96 311.4 PPR repeat
XP_057781270.1 Pfam PF23276 TPR_24 Repeat 468 575 6.2e-34 117.5 Pentatricopeptide repeat-containing protein
XP_057781270.1 Pfam PF12854 PPR_1 Repeat 491 524 3.3e-120 392.2 PPR repeat
XP_057781270.1 Pfam PF13041 PPR_2 Repeat 495 542 2.7e-153 498.7 PPR repeat family
XP_057781270.1 Pfam PF01535 PPR Repeat 499 528 1e-96 311.4 PPR repeat
XP_057781270.1 Pfam PF01535 PPR Repeat 534 563 1e-96 311.4 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057925287.1
TTTCATCCCTTTTTTCAGATTCAATCACAACTCCTAACCAAAGGAGAGAAGAAAAGATTCAAACTCACCGATTAACGATGATGAGGAGAAGAACTGCTGTTTCTGCAATCGATCTCATTCATGGAAGTGGATTTCTCAATCGATGGTCGCATAAATCGGGTATTCTCTCTCCTACATTCTCTCTCTTCTCTTCCATGGCTTCTCAACCTACGCGGCCCAGAATCGATTTCAGCTGTGTTAAAGAATTAAATGATGCTATT...

CDS

1 records

下载 CDS FASTA
LOC130999680
ATGATGAGGAGAAGAACTGCTGTTTCTGCAATCGATCTCATTCATGGAAGTGGATTTCTCAATCGATGGTCGCATAAATCGGGTATTCTCTCTCCTACATTCTCTCTCTTCTCTTCCATGGCTTCTCAACCTACGCGGCCCAGAATCGATTTCAGCTGTGTTAAAGAATTAAATGATGCTATTGAATTGTTTCAAAAAATGAAGTGTATGCAGCTGGAGGCTCCTGTTCTCGCGTATAATAAACTTATGAGTATTAGTGT...

Protein

1 records

下载 Protein FASTA
XP_057781270.1
MMRRRTAVSAIDLIHGSGFLNRWSHKSGILSPTFSLFSSMASQPTRPRIDFSCVKELNDAIELFQKMKCMQLEAPVLAYNKLMSISVKIEQYSFALDVFDEMLRMGVPVNVYTMTIAVNCCCLLKDIKSGFAIMGMFFKRGYEPNVTTFNTLIKGLFLDHRVVEAGKLFNKILRFRICEPNDVMILAMVDGLCKSGNVLPARDLVRRLERSRLRPNVKAYNALLDGLRKSGMVDDAFQLLSRMIEKGISPNVVTYNSMIQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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