当前解析结果
SmilChr08G000060| 统一新 Gene ID | SmilChr08G000060 |
|---|---|
| 名称 | SmilChr08G000060 |
| 描述 | 6,7,8-trihydroxycoumarin synthase-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 351541 - 353760 / - |
| NCBI Gene ID | LOC130996989 |
|---|---|
| GeneID | 130996989 |
| locus_tag | - |
| NCBI Name | LOC130996989 |
| 原始查询 | SmilChr08G000060 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | 6,7,8-trihydroxycoumarin synthase-like |
| 产物 | 6%2C7%2C8-trihydroxycoumarin synthase-like |
| Arabidopsis | AT4G31500 (CYP83B1)cytochrome P450, family 83, subfamily B, polypeptide 1 [Source:NCBI gene (formerly Entrezgene);Acc:829277] identity=45.1; qcov=1.01; evalue=4.17e-150; confidence=high |
| Rice | Os09g0275400- identity=37.1; qcov=1.02; evalue=3.98e-113; confidence=medium |
| GO | GO:0004497 (monooxygenase activity); GO:0005506 (iron ion binding); GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen); GO:0020037 (heme binding) |
| KEGG | - |
| Pfam | PF00067 (p450) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130996989 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057778253.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 0.80000 | XP_057778253.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057778253.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057778253.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057778253.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:351554 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A7,B130,B30,B91,C33 |
Chr8:351619 |
A |
AAT |
2bp_insertion | frameshift_variant | 1 | B136 |
Chr8:351619 |
A |
AAT |
2bp_insertion | CDS_variant | 1 | B136 |
Chr8:351647 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr8:351662 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A2 |
Chr8:351733 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B29,C35 |
Chr8:351747 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B124 |
Chr8:351757 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A7,B130,B30,B91,C35 |
Chr8:351766 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B121,B48,B66 |
Chr8:351772 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C13,C23 |
Chr8:351777 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A21,C1,C85,D2 |
Chr8:351806 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B101 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057778253.1PF00067
p450 29-492 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057778253.1 |
Pfam | PF00067 |
p450 | Domain | 29 | 492 | 4.9e-100 | 336.2 | Cytochrome P450 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。