当前解析结果
SmilChr08G000063| 统一新 Gene ID | SmilChr08G000063 |
|---|---|
| 名称 | SmilChr08G000063 |
| 描述 | 6,7,8-trihydroxycoumarin synthase-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 364351 - 366410 / - |
| NCBI Gene ID | LOC130999685 |
|---|---|
| GeneID | 130999685 |
| locus_tag | - |
| NCBI Name | LOC130999685 |
| 原始查询 | SmilChr08G000063 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | 6,7,8-trihydroxycoumarin synthase-like |
| 产物 | 6%2C7%2C8-trihydroxycoumarin synthase-like |
| Arabidopsis | AT4G31500 (CYP83B1)cytochrome P450, family 83, subfamily B, polypeptide 1 [Source:NCBI gene (formerly Entrezgene);Acc:829277] identity=48.2; qcov=0.976; evalue=2.51e-158; confidence=high |
| Rice | Os02g0185900- identity=37.8; qcov=0.964; evalue=1.44e-117; confidence=medium |
| GO | GO:0004497 (monooxygenase activity); GO:0005506 (iron ion binding); GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen); GO:0020037 (heme binding) |
| KEGG | - |
| Pfam | PF00067 (p450) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999685 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057781280.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 0.60000 | XP_057781280.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057781280.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057781280.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057781280.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:364431 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C23 |
Chr8:364493 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B26,C1 |
Chr8:364498 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B112,B98,C75,C78,D7 |
Chr8:364508 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B114,C25 |
Chr8:364519 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C1 |
Chr8:364520 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | B107 |
Chr8:364520 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B107 |
Chr8:364531 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B19,B40,B53,C49,D1 |
Chr8:364545 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A21,B104,C14 |
Chr8:364554 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B107,C6,C79 |
Chr8:364644 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A8,B44,B83,C52,C61 |
Chr8:364648 |
TC |
T |
1bp_deletion | frameshift_variant | 90 | A18,A2,A21,A24,A7,B1,B101,B104,B106,B108,B117,B12,B122,B123,B124,B126,B128,B129,B13,B130,B131,B135,B138,B14,B140,B18,B19,B2,B21,B23,B24,B25,B26,B28,B32,B33,B36,B4,B41,B42,B43,B46,B47,B5,B53,B56,B59,B60,B66,B68,B69,B78,B79,B83,B85,B88,B90,B92,B96,B97,C14,C15,C20,C22,C23,C28,C29,C31,C36,C38,C43,C44,C48,C51,C54,C55,C57,C59,C6,C64,C65,C66,C78,C8,C82,C85,D4,D6,D7,D8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057781280.1PF00067
p450 29-491 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781280.1 |
Pfam | PF00067 |
p450 | Domain | 29 | 491 | 2.2e-104 | 350.5 | Cytochrome P450 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。