当前解析结果
SmilChr08G000065| 统一新 Gene ID | SmilChr08G000065 |
|---|---|
| 名称 | SmilChr08G000065 |
| 描述 | 2-alkenal reductase (NADP(+)-dependent)-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 371675 - 374830 / - |
| NCBI Gene ID | LOC130999688 |
|---|---|
| GeneID | 130999688 |
| locus_tag | - |
| NCBI Name | LOC130999688 |
| 原始查询 | SmilChr08G000065 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | 2-alkenal reductase (NADP(+)-dependent)-like |
| 产物 | 2-alkenal reductase (NADP(+)-dependent)-like |
| Arabidopsis | AT5G17000 (AT5G17000)Zinc-binding dehydrogenase family protein [Source:NCBI gene (formerly Entrezgene);Acc:831563] identity=66.1; qcov=1; evalue=8.79e-166; confidence=high |
| Rice | Os04g0497000 (OsNADPH1)- identity=66.3; qcov=1; evalue=4.72e-169; confidence=high |
| GO | GO:0032440 (2-alkenal reductase [NAD(P)H] activity) |
| KEGG | - |
| Pfam | PF00107 (ADH_zinc_N); PF13602 (ADH_zinc_N_2); PF16884 (ADH_N_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999688 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057781282.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057781282.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057781282.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057781282.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057781282.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:371780 |
G |
A |
EMS_canonical_SNV | stop_gained | 5 | B79,C29,C48,C55,C64 |
Chr8:371780 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B79,C29,C48,C55,C64 |
Chr8:371846 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B128,B95,C37 |
Chr8:371876 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B111,B83 |
Chr8:371888 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B45,B50 |
Chr8:371919 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr8:371935 |
AC |
A |
1bp_deletion | frameshift_variant | 5 | B120,B129,B41,C65,D4 |
Chr8:371935 |
AC |
A |
1bp_deletion | CDS_variant | 5 | B120,B129,B41,C65,D4 |
Chr8:371987 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B1,B117,C82 |
Chr8:372129 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B42,B43,C19 |
Chr8:373247 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B45,C41,D2 |
Chr8:373299 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057781282.1PF16884
ADH_N_2 5-113 aa
PF00107
ADH_zinc_N 163-296 aa
PF13602
ADH_zinc_N_2 197-336 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781282.1 |
Pfam | PF16884 |
ADH_N_2 | Family | 5 | 113 | 6.1e-28 | 97.6 | N-terminal domain of oxidoreductase |
XP_057781282.1 |
Pfam | PF00107 |
ADH_zinc_N | Domain | 163 | 296 | 9.6e-24 | 84.5 | Zinc-binding dehydrogenase |
XP_057781282.1 |
Pfam | PF13602 |
ADH_zinc_N_2 | Domain | 197 | 336 | 9e-08 | 33.8 | Zinc-binding dehydrogenase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。