当前解析结果
SmilChr08G000066| 统一新 Gene ID | SmilChr08G000066 |
|---|---|
| 名称 | SmilChr08G000066 |
| 描述 | acyltransferase GLAUCE-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 375894 - 377916 / - |
| NCBI Gene ID | LOC130999689 |
|---|---|
| GeneID | 130999689 |
| locus_tag | - |
| NCBI Name | LOC130999689 |
| 原始查询 | SmilChr08G000066 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | acyltransferase GLAUCE-like |
| 产物 | acyltransferase GLAUCE-like |
| Arabidopsis | AT1G65450 (GLC)HXXXD-type acyl-transferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:842857] identity=50.9; qcov=1; evalue=2.29e-154; confidence=high |
| Rice | Os01g0924933 (DPW2)- identity=32; qcov=0.967; evalue=8.88e-57; confidence=low |
| GO | GO:0016747 (acyltransferase activity, transferring groups other than amino-acyl groups) |
| KEGG | - |
| Pfam | PF02458 (Transferase) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999689 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057781283.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057781283.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057781283.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057781283.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057781283.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:376019 |
A |
AAT |
2bp_insertion | frameshift_variant | 33 | A13,A24,A5,A7,A9,B102,B114,B120,B125,B129,B18,B27,B32,B38,B39,B50,B65,B66,C10,C11,C12,C27,C42,C43,C49,C53,C55,C65,C69,C72,C76,C87,D4 |
Chr8:376027 |
C |
CT |
1bp_insertion | frameshift_variant | 11 | A9,B102,B125,B32,B38,B39,C27,C42,C76,C87,D4 |
Chr8:376061 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C13 |
Chr8:376079 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B120,B3 |
Chr8:376121 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B65,C17,C25,C30,C61 |
Chr8:376122 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D7 |
Chr8:376129 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B128,B95,C37 |
Chr8:376146 |
A |
AT |
1bp_insertion | frameshift_variant | 3 | B67,B83,C84 |
Chr8:376146 |
A |
AT |
1bp_insertion | CDS_variant | 3 | B67,B83,C84 |
Chr8:376149 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B1,B24 |
Chr8:376244 |
AAT |
A |
2bp_deletion | frameshift_variant | 22 | A1,A18,A20,A3,A4,B118,B122,B139,B38,B40,B50,B53,B56,B63,B69,B77,C15,C21,C44,C51,C63,C84 |
Chr8:376247 |
CG |
C |
1bp_deletion | frameshift_variant | 23 | A1,A18,A20,A3,A4,B118,B122,B139,B25,B38,B40,B50,B53,B56,B63,B69,B77,C15,C21,C44,C51,C63,C84 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057781283.1PF02458
Transferase 13-435 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781283.1 |
Pfam | PF02458 |
Transferase | Family | 13 | 435 | 6.2e-100 | 335.6 | Transferase family |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。