Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000067`

染色体: Chr08 坐标: 381978-386133 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000067`
名称	SmilChr08G000067
描述	fatty acyl-CoA reductase 2, chloroplastic-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	381978 - 386133 / `-`

ID 对照

NCBI Gene ID	`LOC130999690`
GeneID	`130999690`
locus_tag	`-`
NCBI Name	`LOC130999690`
原始查询	`SmilChr08G000067`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	fatty acyl-CoA reductase 2, chloroplastic-like
产物	fatty acyl-CoA reductase 2%2C chloroplastic-like
Arabidopsis	`AT3G11980` (MS2) Jojoba acyl CoA reductase-related male sterility protein [Source:NCBI gene (formerly Entrezgene);Acc:820372] identity=42.7; qcov=1.02; evalue=1.79e-152; confidence=medium
Rice	`Os03g0167600` (OsMS2) - identity=40.7; qcov=0.923; evalue=3.27e-136; confidence=medium
GO	GO:0010345 (suberin biosynthetic process); GO:0035336 (long-chain fatty-acyl-CoA metabolic process); GO:0043231 (intracellular membrane-bounded organelle); GO:0080019 (alcohol-forming very long-chain fatty acyl-CoA reductase activity)
KEGG	smil00073 (Cutin, suberine and wax biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil04146 (Peroxisome - Salvia miltiorrhiza (redroot sage))
Pfam	PF01370 (Epimerase); PF03015 (Sterile); PF07993 (NAD_binding_4)
InterPro	-
eggNOG	-
NR	GeneID:130999690

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	0.80000	`XP_057781285.1`
2	Chloroplast membrane	叶绿体膜	0.20000	`XP_057781285.1`
3	Peroxisome	过氧化物酶体	0.20000	`XP_057781285.1`
4	Peroxisome membrane	过氧化物酶体膜	0.20000	`XP_057781285.1`
5	Nucleus	细胞核	0.00000	`XP_057781285.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:382045`	`CT`	`C`	1bp_deletion	frameshift_variant	115	A10,A11,A14,A24,A6,A7,B100,B104,B107,B108,B11,B111,B112,B115,B119,B120,B123,B124,B127,B128,B13,B132,B135,B136,B138,B14,B15,B17,B2,B22,B26,B3,B30,B32,B35,B36,B37,B41,B42,B43,B44,B45,B46,B47,B48,B49,B50,B52,B53,B59,B61,B63,B69,B71,B74,B76,B77,B8,B80,B82,B9,B90,B91,B92,B94,B95,B97,B98,C1,C16,C18,C19,C22,C23,C25,C26,C28,C29,C3,C30,C31,C34,C35,C36,C39,C4,C40,C41,C42,C44,C46,C47,C48,C50,C51,C54,C58,C59,C6,C60,C61,C67,C72,C73,C74,C77,C79,C8,C80,C9,D2,D3,D5,D8,D9
`Chr8:382085`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C48
`Chr8:382097`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B124,D11
`Chr8:382155`	`AT`	`A`	1bp_deletion	frameshift_variant	12	A16,A4,B123,B17,B68,B70,B71,B80,C18,C46,C80,D9
`Chr8:382177`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B80
`Chr8:382187`	`CT`	`C`	1bp_deletion	frameshift_variant	10	A18,B11,B124,B131,B28,B3,B30,B7,B88,C57
`Chr8:382471`	`AT`	`A`	1bp_deletion	frameshift_variant	2	C25,C61
`Chr8:382471`	`AT`	`A`	1bp_deletion	CDS_variant	2	C25,C61
`Chr8:382698`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B12,B55,B76,C57,C61
`Chr8:382708`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A5,C65
`Chr8:382720`	`C`	`CA`	1bp_insertion	frameshift_variant	1	B60
`Chr8:382720`	`C`	`CA`	1bp_insertion	CDS_variant	1	B60

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781285.1

548 aa

274

548

Epimerase

NAD_binding_4

Sterile

PF01370 Epimerase 69-227 aa PF07993 NAD_binding_4 71-371 aa PF03015 Sterile 477-543 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781285.1`	Pfam	`PF01370`	Epimerase	Family	69	227	2.9e-08	34.2	NAD dependent epimerase/dehydratase family
`XP_057781285.1`	Pfam	`PF07993`	NAD_binding_4	Family	71	371	1.1e-73	248.4	Male sterility protein
`XP_057781285.1`	Pfam	`PF03015`	Sterile	Family	477	543	5.4e-14	52.8	Male sterility protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057925302.1
GCTAACAAAGAGCCCGTTTTTCTATCCAGCAACTAGGGAAATTAAGGGCATGTCGCCTTGTGACAAATCCAAGATTTCCTTGTTGTGTAATAATGCAAAGAAAATCCATCTAAGAAGAAGAATAGTTTCCCAAAATAGTAAGATAACGGCAGCAGTTACTAACGGCTATGACGCCGTTGGAGAACTGAAGATGCCAGCAATGATGGAGTCTTGCACAGGAATTGGAATAACCAATTATTTTGAAGGAAAGAACATTTTCC...

CDS

1 records

下载 CDS FASTA

LOC130999690
ATGTCGCCTTGTGACAAATCCAAGATTTCCTTGTTGTGTAATAATGCAAAGAAAATCCATCTAAGAAGAAGAATAGTTTCCCAAAATAGTAAGATAACGGCAGCAGTTACTAACGGCTATGACGCCGTTGGAGAACTGAAGATGCCAGCAATGATGGAGTCTTGCACAGGAATTGGAATAACCAATTATTTTGAAGGAAAGAACATTTTCCTTACCGGTGCAACTGGCCTTCTAGGAAAAGTTCTTGTGGAGAAGATGCT...

Protein

1 records

下载 Protein FASTA

XP_057781285.1
MSPCDKSKISLLCNNAKKIHLRRRIVSQNSKITAAVTNGYDAVGELKMPAMMESCTGIGITNYFEGKNIFLTGATGLLGKVLVEKMLRSTPLGKIYVLVKADDLETAWDRLQKELINSELFGCIQEKYGKYYQEFIKEKVIPIVGNICEPNLGMDSDSARAIMEDVNVIIESAANTTLNERYDLLLETNVNGPQRLMRFAKTCKNLELLVHISTVYVNGEKEGIILEKPLIMGEINRRNKDNGETCLPLDVSDEINLALR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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