当前解析结果
SmilChr08G000078| 统一新 Gene ID | SmilChr08G000078 |
|---|---|
| 名称 | SmilChr08G000078 |
| 描述 | probable disease resistance protein RXW24L |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 451593 - 470408 / + |
| NCBI Gene ID | LOC130996992 |
|---|---|
| GeneID | 130996992 |
| locus_tag | - |
| NCBI Name | LOC130996992 |
| 原始查询 | SmilChr08G000078 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable disease resistance protein RXW24L |
| 产物 | probable disease resistance protein RXW24L |
| Arabidopsis | AT1G58390 (AT1G58390)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:842208] identity=33.7; qcov=0.882; evalue=3.22e-89; confidence=low |
| Rice | Os07g0186500- identity=28.7; qcov=0.913; evalue=3.9e-54; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF18052 (Rx_N); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130996992 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057778256.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057778256.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057778256.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057778256.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057778256.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:451607 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A20,B17,B74,C76 |
Chr8:451608 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C48 |
Chr8:451613 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C17,C82 |
Chr8:451618 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B13,C67 |
Chr8:451620 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B114,C33 |
Chr8:451647 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | C32,C45,C68,C78,C9 |
Chr8:451653 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B137,B91,C84 |
Chr8:451671 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B104,C30,C79 |
Chr8:451739 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C51 |
Chr8:451741 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C48 |
Chr8:451747 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C48 |
Chr8:451755 |
AGC |
A |
2bp_deletion | frameshift_variant | 18 | A7,A9,B134,B32,B40,B53,B59,B66,C27,C39,C53,C58,C68,C84,C87,D2,D3,D4 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057778256.1PF18052
Rx_N 5-89 aa
PF00931
NB-ARC 130-220 aa
PF23559
WHD_DRP 303-377 aa
PF23598
LRR_14 436-756 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057778256.1 |
Pfam | PF18052 |
Rx_N | Domain | 5 | 89 | 7.4e-18 | 65.2 | Rx N-terminal domain |
XP_057778256.1 |
Pfam | PF00931 |
NB-ARC | Domain | 130 | 220 | 1.1e-16 | 61.6 | NB-ARC domain |
XP_057778256.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 303 | 377 | 4.2e-13 | 49.8 | Disease resistance protein Winged helix domain |
XP_057778256.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 436 | 756 | 3.8e-25 | 89.1 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。