当前解析结果
SmilChr08G000086| 统一新 Gene ID | SmilChr08G000086 |
|---|---|
| 名称 | SmilChr08G000086 |
| 描述 | acyltransferase GLAUCE-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 494431 - 496899 / + |
| NCBI Gene ID | LOC130999712 |
|---|---|
| GeneID | 130999712 |
| locus_tag | - |
| NCBI Name | LOC130999712 |
| 原始查询 | SmilChr08G000086 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | acyltransferase GLAUCE-like |
| 产物 | acyltransferase GLAUCE-like |
| Arabidopsis | AT1G65450 (GLC)HXXXD-type acyl-transferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:842857] identity=46.9; qcov=1; evalue=4.2e-150; confidence=high |
| Rice | Os01g0924933 (DPW2)- identity=31; qcov=0.982; evalue=9.6e-51; confidence=low |
| GO | GO:0016747 (acyltransferase activity, transferring groups other than amino-acyl groups) |
| KEGG | - |
| Pfam | PF02458 (Transferase) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999712 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057781317.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057781317.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057781317.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057781317.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057781317.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:494598 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B135,C17 |
Chr8:494739 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B18,B78,C65 |
Chr8:494744 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C14 |
Chr8:494797 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B36,C13 |
Chr8:494808 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B119,B130,B91,C20,C29 |
Chr8:494811 |
TG |
T |
1bp_deletion | frameshift_variant | 3 | B139,B58,B69 |
Chr8:494811 |
TG |
T |
1bp_deletion | CDS_variant | 3 | B139,B58,B69 |
Chr8:494824 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B135,B44,D8 |
Chr8:494851 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B139,B53,B58 |
Chr8:494855 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B139,B58 |
Chr8:494869 |
AAC |
A |
2bp_deletion | frameshift_variant | 1 | B139 |
Chr8:494869 |
AAC |
A |
2bp_deletion | CDS_variant | 1 | B139 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057781317.1PF02458
Transferase 13-443 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781317.1 |
Pfam | PF02458 |
Transferase | Family | 13 | 443 | 4.5e-92 | 309.7 | Transferase family |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。