当前解析结果
SmilChr08G000087| 统一新 Gene ID | SmilChr08G000087 |
|---|---|
| 名称 | SmilChr08G000087 |
| 描述 | probable disease resistance protein At1g58602 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 502850 - 505776 / + |
| NCBI Gene ID | LOC130996996 |
|---|---|
| GeneID | 130996996 |
| locus_tag | - |
| NCBI Name | LOC130996996 |
| 原始查询 | SmilChr08G000087 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable disease resistance protein At1g58602 |
| 产物 | probable disease resistance protein At1g58602 |
| Arabidopsis | AT1G58390 (AT1G58390)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:842208] identity=33.3; qcov=1.03; evalue=6.85e-130; confidence=low |
| Rice | Os10g0183000 (OsLSR)- identity=28.7; qcov=1.04; evalue=2.82e-79; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF13191 (AAA_16); PF18052 (Rx_N); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130996996 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057778260.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057778260.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057778260.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057778260.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057778260.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:502875 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C67 |
Chr8:502907 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B90 |
Chr8:502940 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B79,C13,D3 |
Chr8:502946 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B3,B5 |
Chr8:503001 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B100,B30,C13,C33,C37 |
Chr8:503029 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B100,B16,B66,C11 |
Chr8:503035 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A2,A6,B108,B98,C21 |
Chr8:503037 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B31,C67 |
Chr8:503056 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B111,B83 |
Chr8:503064 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
Chr8:503074 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B2,B91 |
Chr8:503082 |
GA |
G |
1bp_deletion | frameshift_variant | 7 | B111,B30,B59,B95,C40,C85,C86 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057778260.1PF18052
Rx_N 5-88 aa
PF13191
AAA_16 168-283 aa
PF00931
NB-ARC 173-343 aa
PF23559
WHD_DRP 426-500 aa
PF23598
LRR_14 574-893 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057778260.1 |
Pfam | PF18052 |
Rx_N | Domain | 5 | 88 | 1.6e-16 | 60.9 | Rx N-terminal domain |
XP_057778260.1 |
Pfam | PF13191 |
AAA_16 | Domain | 168 | 283 | 3.8e-09 | 38.0 | AAA ATPase domain |
XP_057778260.1 |
Pfam | PF00931 |
NB-ARC | Domain | 173 | 343 | 3.2e-35 | 121.9 | NB-ARC domain |
XP_057778260.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 426 | 500 | 3e-13 | 50.3 | Disease resistance protein Winged helix domain |
XP_057778260.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 574 | 893 | 8.7e-26 | 91.2 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。