当前解析结果
SmilChr08G000088| 统一新 Gene ID | SmilChr08G000088 |
|---|---|
| 名称 | SmilChr08G000088 |
| 描述 | probable disease resistance protein At1g58602 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 511583 - 557893 / + |
| NCBI Gene ID | LOC130999700 |
|---|---|
| GeneID | 130999700 |
| locus_tag | - |
| NCBI Name | LOC130999700 |
| 原始查询 | SmilChr08G000088 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable disease resistance protein At1g58602 |
| 产物 | probable disease resistance protein At1g58602 |
| Arabidopsis | AT1G58390 (AT1G58390)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:842208] identity=33; qcov=1.02; evalue=3.56e-129; confidence=low |
| Rice | Os07g0186500- identity=26.8; qcov=1.04; evalue=5.92e-71; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF18052 (Rx_N); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999700 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057781300.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057781300.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057781300.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057781300.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057781300.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:512143 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B55 |
Chr8:512159 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B16,D8 |
Chr8:512166 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | C42,C6,C60,C85 |
Chr8:554459 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B25,B98,D8 |
Chr8:554468 |
AT |
A |
1bp_deletion | frameshift_variant | 2 | A21,C2 |
Chr8:554468 |
AT |
A |
1bp_deletion | CDS_variant | 2 | A21,C2 |
Chr8:554484 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B103,C76,D8 |
Chr8:554510 |
CA |
C |
1bp_deletion | frameshift_variant | 1 | C7 |
Chr8:554510 |
CA |
C |
1bp_deletion | CDS_variant | 1 | C7 |
Chr8:554521 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B75,C86 |
Chr8:554531 |
TC |
T |
1bp_deletion | frameshift_variant | 2 | B8,C72 |
Chr8:554531 |
TC |
T |
1bp_deletion | CDS_variant | 2 | B8,C72 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057781300.1PF18052
Rx_N 45-124 aa
PF00931
NB-ARC 212-384 aa
PF23559
WHD_DRP 468-542 aa
PF23598
LRR_14 618-934 aa
XP_057781301.1PF18052
Rx_N 5-84 aa
PF00931
NB-ARC 172-344 aa
PF23559
WHD_DRP 428-502 aa
PF23598
LRR_14 578-894 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781300.1 |
Pfam | PF18052 |
Rx_N | Domain | 45 | 124 | 4.2e-17 | 62.7 | Rx N-terminal domain |
XP_057781300.1 |
Pfam | PF00931 |
NB-ARC | Domain | 212 | 384 | 7.3e-36 | 124.1 | NB-ARC domain |
XP_057781300.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 468 | 542 | 4.3e-12 | 46.6 | Disease resistance protein Winged helix domain |
XP_057781300.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 618 | 934 | 1.8e-27 | 96.8 | Leucine-rich repeat region |
XP_057781301.1 |
Pfam | PF18052 |
Rx_N | Domain | 5 | 84 | 1.5e-17 | 64.2 | Rx N-terminal domain |
XP_057781301.1 |
Pfam | PF00931 |
NB-ARC | Domain | 172 | 344 | 7.8e-36 | 124.0 | NB-ARC domain |
XP_057781301.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 428 | 502 | 4e-12 | 46.7 | Disease resistance protein Winged helix domain |
XP_057781301.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 578 | 894 | 7e-28 | 98.1 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。