当前解析结果
SmilChr08G000092| 统一新 Gene ID | SmilChr08G000092 |
|---|---|
| 名称 | SmilChr08G000092 |
| 描述 | probable disease resistance protein At1g58390 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 567357 - 569880 / + |
| NCBI Gene ID | LOC130996997 |
|---|---|
| GeneID | 130996997 |
| locus_tag | - |
| NCBI Name | LOC130996997 |
| 原始查询 | SmilChr08G000092 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable disease resistance protein At1g58390 |
| 产物 | probable disease resistance protein At1g58390 |
| Arabidopsis | AT1G50180 (AT1G50180)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:841440] identity=35.7; qcov=0.865; evalue=1.19e-103; confidence=medium |
| Rice | Os02g0191000- identity=26.9; qcov=0.937; evalue=1.98e-61; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF13191 (AAA_16); PF18052 (Rx_N); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130996997 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057778261.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057778261.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057778261.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057778261.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057778261.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:567436 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr8:567457 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B81 |
Chr8:567458 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B81 |
Chr8:567526 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B24,B54,B77,C4 |
Chr8:567535 |
C |
T |
EMS_canonical_SNV | stop_gained | 45 | A10,A16,A5,A8,B105,B118,B120,B125,B14,B17,B26,B31,B35,B47,B48,B53,B55,B58,B67,B69,B79,B8,B83,B85,B96,B97,B99,C10,C11,C16,C20,C30,C36,C37,C4,C54,C67,C69,C7,C73,C75,C79,C8,D2,D9 |
Chr8:567541 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B24,B39,B54,B77,C4 |
Chr8:567563 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | B53 |
Chr8:567563 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B53 |
Chr8:567576 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A21,B2,C2,C85 |
Chr8:567618 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B135,B3,C14,C8,C83 |
Chr8:567620 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B123,B80,C18,C46 |
Chr8:567647 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B123,B80,C46,C48 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057778261.1PF18052
Rx_N 5-83 aa
PF13191
AAA_16 168-285 aa
PF00931
NB-ARC 172-345 aa
PF23559
WHD_DRP 425-502 aa
PF23598
LRR_14 559-751 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057778261.1 |
Pfam | PF18052 |
Rx_N | Domain | 5 | 83 | 3.8e-18 | 66.1 | Rx N-terminal domain |
XP_057778261.1 |
Pfam | PF13191 |
AAA_16 | Domain | 168 | 285 | 2.9e-08 | 35.1 | AAA ATPase domain |
XP_057778261.1 |
Pfam | PF00931 |
NB-ARC | Domain | 172 | 345 | 1.1e-36 | 126.8 | NB-ARC domain |
XP_057778261.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 425 | 502 | 4e-13 | 49.9 | Disease resistance protein Winged helix domain |
XP_057778261.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 559 | 751 | 4.7e-12 | 46.0 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。