Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000109`

染色体: Chr08 坐标: 690186-697641 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000109`
名称	SmilChr08G000109
描述	chalcone synthase-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	690186 - 697641 / `+`

ID 对照

NCBI Gene ID	`LOC130999730`
GeneID	`130999730`
locus_tag	`-`
NCBI Name	`LOC130999730`
原始查询	`SmilChr08G000109`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	chalcone synthase-like
产物	chalcone synthase-like
Arabidopsis	`AT5G13930` (TT4) Chalcone and stilbene synthase family protein [Source:NCBI gene (formerly Entrezgene);Acc:831241] identity=63.6; qcov=0.997; evalue=5.96e-156; confidence=high
Rice	`Os11g0530600` (CHS*) - identity=65; qcov=0.994; evalue=5.92e-159; confidence=high
GO	GO:0016747 (acyltransferase activity, transferring groups other than amino-acyl groups); GO:0030639 (polyketide biosynthetic process)
KEGG	smil00941 (Flavonoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil04712 (Circadian rhythm - plant - Salvia miltiorrhiza (redroot sage))
Pfam	PF00195 (Chal_sti_synt_N); PF02797 (Chal_sti_synt_C)
InterPro	-
eggNOG	-
NR	GeneID:130999730

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	0.60000	`XP_057781333.1`
2	Peroxisome	过氧化物酶体	0.40000	`XP_057781333.1`
3	Lipid droplet	脂滴	0.40000	`XP_057781333.1`
4	Cytosol	细胞质基质	0.20000	`XP_057781334.1`
5	Nucleus	细胞核	0.00000	`XP_057781333.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:690227`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B2
`Chr8:690236`	`GA`	`G`	1bp_deletion	frameshift_variant	2	A21,B42
`Chr8:690236`	`GA`	`G`	1bp_deletion	CDS_variant	2	A21,B42
`Chr8:690239`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B7,C55
`Chr8:690240`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B1
`Chr8:690257`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B137
`Chr8:690258`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B122,B71,C62
`Chr8:690264`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B11,C34,C45
`Chr8:690272`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B137,B2,C42,C6,C60
`Chr8:690315`	`C`	`T`	EMS_canonical_SNV	stop_gained	95	A11,A15,A16,A18,A2,A20,A25,A3,A5,A6,B1,B10,B101,B102,B103,B104,B107,B113,B115,B117,B120,B122,B126,B129,B131,B136,B139,B18,B2,B21,B22,B24,B26,B27,B28,B30,B33,B34,B40,B43,B47,B53,B54,B55,B57,B59,B63,B7,B72,B78,B79,B81,B82,B83,B87,B89,B91,B93,B94,B95,B96,B97,C10,C11,C13,C15,C19,C20,C22,C27,C3,C32,C39,C41,C43,C44,C47,C49,C5,C51,C52,C53,C54,C55,C62,C63,C64,C68,C69,C70,C72,C74,D1,D10,D3
`Chr8:690353`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B2,B61,C72
`Chr8:696436`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C52

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781333.1

391 aa

196

391

Chal_sti_synt_N

Chal_sti_synt_C

PF00195 Chal_sti_synt_N 5-229 aa PF02797 Chal_sti_synt_C 238-388 aa

XP_057781334.1

328 aa

164

328

Chal_sti_synt_N

Chal_sti_synt_C

PF00195 Chal_sti_synt_N 1-166 aa PF02797 Chal_sti_synt_C 175-325 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781333.1`	Pfam	`PF00195`	Chal_sti_synt_N	Domain	5	229	1.1e-107	359.3	Chalcone and stilbene synthases, N-terminal domain
`XP_057781333.1`	Pfam	`PF02797`	Chal_sti_synt_C	Domain	238	388	3.6e-60	203.1	Chalcone and stilbene synthases, C-terminal domain
`XP_057781334.1`	Pfam	`PF00195`	Chal_sti_synt_N	Domain	1	166	5.2e-78	262.3	Chalcone and stilbene synthases, N-terminal domain
`XP_057781334.1`	Pfam	`PF02797`	Chal_sti_synt_C	Domain	175	325	2.5e-60	203.6	Chalcone and stilbene synthases, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057925350.1
TCAAGCAACACATTTTCCGGCGATATAAATTAAATGGCAAGCGTGGAGGAGATCCGTCGAGCACGACGAGCCGAGGGTCCGGCCACCGTGTTGGCGATTGGCACCGCCACGCCGCCGAACTGCGTCGAGCAGAGCACGTTTCCCGATTACTACTTCCGTGTCACAAACAGTGAGCATAAGACCGAACTCAAAGAGAAATTCAAGCGCATTTGCGAAAATTCGATGATCAAGAAACGCTACATGCACCTGACAGAGGATCT...

XM_057925351.1
AAGCGCATTTGCGAAAATTCGATGATCAAGAAACGCTACATGCACCTGACAGAGGATCTCCTCAAGGAAAACCCCAACATCGCCGCCTACTCCGCGCCGTCGCTGGATGCGCGGCAGGAGATGGCGGTGGTGGAGGTGCCGAAGCTGGGGCAGGAAGCGGCGGAGAAGGCGATCAAGGAATGGGGGCAGCCCAAGTCCAACATCACCCACCTCATCTTCTGCACCAGCACTATCTCCGTCGACATGCCCGGCGCCGACTA...

CDS

2 records

下载 CDS FASTA

LOC130999730
ATGGCAAGCGTGGAGGAGATCCGTCGAGCACGACGAGCCGAGGGTCCGGCCACCGTGTTGGCGATTGGCACCGCCACGCCGCCGAACTGCGTCGAGCAGAGCACGTTTCCCGATTACTACTTCCGTGTCACAAACAGTGAGCATAAGACCGAACTCAAAGAGAAATTCAAGCGCATTTGCGAAAATTCGATGATCAAGAAACGCTACATGCACCTGACAGAGGATCTCCTCAAGGAAAACCCCAACATCGCCGCCTACTC...

LOC130999730
ATGATCAAGAAACGCTACATGCACCTGACAGAGGATCTCCTCAAGGAAAACCCCAACATCGCCGCCTACTCCGCGCCGTCGCTGGATGCGCGGCAGGAGATGGCGGTGGTGGAGGTGCCGAAGCTGGGGCAGGAAGCGGCGGAGAAGGCGATCAAGGAATGGGGGCAGCCCAAGTCCAACATCACCCACCTCATCTTCTGCACCAGCACTATCTCCGTCGACATGCCCGGCGCCGACTACCGCCTCGCCAACCTCCTCGG...

Protein

2 records

下载 Protein FASTA

XP_057781333.1
MASVEEIRRARRAEGPATVLAIGTATPPNCVEQSTFPDYYFRVTNSEHKTELKEKFKRICENSMIKKRYMHLTEDLLKENPNIAAYSAPSLDARQEMAVVEVPKLGQEAAEKAIKEWGQPKSNITHLIFCTSTISVDMPGADYRLANLLGLCSSVTRTMMSQHGCCGGASALRLAKDVAENNAAARVLVVCCEFTAICFRGPNEARIGDLVGQAIFGDAAAALIVGADPAAAELPLFQIMSAAQATIPGSGDCIRGRMRE...

XP_057781334.1
MIKKRYMHLTEDLLKENPNIAAYSAPSLDARQEMAVVEVPKLGQEAAEKAIKEWGQPKSNITHLIFCTSTISVDMPGADYRLANLLGLCSSVTRTMMSQHGCCGGASALRLAKDVAENNAAARVLVVCCEFTAICFRGPNEARIGDLVGQAIFGDAAAALIVGADPAAAELPLFQIMSAAQATIPGSGDCIRGRMREAGLLIDLAKGIPGLVSDNIEESLERAFGPWGISDWNSIFWVVHSGGPAILNQVEARLGLKPER...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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