当前解析结果
SmilChr08G000111| 统一新 Gene ID | SmilChr08G000111 |
|---|---|
| 名称 | SmilChr08G000111 |
| 描述 | 2-alkenal reductase (NADP(+)-dependent)-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 701037 - 704287 / + |
| NCBI Gene ID | LOC130999733 |
|---|---|
| GeneID | 130999733 |
| locus_tag | - |
| NCBI Name | LOC130999733 |
| 原始查询 | SmilChr08G000111 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | 2-alkenal reductase (NADP(+)-dependent)-like |
| 产物 | 2-alkenal reductase (NADP(+)-dependent)-like |
| Arabidopsis | AT5G16990 (AT5G16990)Zinc-binding dehydrogenase family protein [Source:NCBI gene (formerly Entrezgene);Acc:831562] identity=70.7; qcov=0.991; evalue=5.95e-178; confidence=high |
| Rice | Os04g0497000 (OsNADPH1)- identity=67.5; qcov=0.991; evalue=1.07e-168; confidence=high |
| GO | GO:0032440 (2-alkenal reductase [NAD(P)H] activity) |
| KEGG | - |
| Pfam | PF00107 (ADH_zinc_N); PF13602 (ADH_zinc_N_2); PF16884 (ADH_N_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999733 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057781336.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057781336.1 |
| 3 | Peroxisome | 过氧化物酶体 | 0.20000 | XP_057781336.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057781336.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057781336.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:701337 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B60 |
Chr8:701390 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B119,C29 |
Chr8:702758 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B100 |
Chr8:703019 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B100 |
Chr8:703648 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B62 |
Chr8:703661 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B42,C8 |
Chr8:703697 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B31 |
Chr8:703714 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C64 |
Chr8:703731 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B137,B31 |
Chr8:703820 |
C |
T |
EMS_canonical_SNV | stop_gained | 3 | A9,B137,B31 |
Chr8:703820 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A9,B137,B31 |
Chr8:703837 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A18,A9,B31,B79,D3 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057781336.1PF16884
ADH_N_2 8-115 aa
PF00107
ADH_zinc_N 166-299 aa
PF13602
ADH_zinc_N_2 200-339 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781336.1 |
Pfam | PF16884 |
ADH_N_2 | Family | 8 | 115 | 4.7e-24 | 85.1 | N-terminal domain of oxidoreductase |
XP_057781336.1 |
Pfam | PF00107 |
ADH_zinc_N | Domain | 166 | 299 | 1.1e-26 | 94.0 | Zinc-binding dehydrogenase |
XP_057781336.1 |
Pfam | PF13602 |
ADH_zinc_N_2 | Domain | 200 | 339 | 3.1e-08 | 35.3 | Zinc-binding dehydrogenase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。