Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000115`

染色体: Chr08 坐标: 717236-722371 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000115`
名称	SmilChr08G000115
描述	acetolactate synthase small subunit 1, chloroplastic-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	717236 - 722371 / `-`

ID 对照

NCBI Gene ID	`LOC130999736`
GeneID	`130999736`
locus_tag	`-`
NCBI Name	`LOC130999736`
原始查询	`SmilChr08G000115`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	acetolactate synthase small subunit 1, chloroplastic-like
产物	acetolactate synthase small subunit 1%2C chloroplastic-like
Arabidopsis	`AT2G31810` (AT2G31810) ACT domain-containing small subunit of acetolactate synthase protein [Source:NCBI gene (formerly Entrezgene);Acc:817738] identity=79; qcov=0.878; evalue=0; confidence=high
Rice	`Os02g0608600` - identity=77.6; qcov=0.703; evalue=0; confidence=high
GO	GO:0003984 (acetolactate synthase activity); GO:0005829 (cytosol); GO:0009097 (GO:0009097); GO:0009099 (L-valine biosynthetic process); GO:1990610 (acetolactate synthase regulator activity)
KEGG	smil00290 (Valine, leucine and isoleucine biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00650 (Butanoate metabolism - Salvia miltiorrhiza (redroot sage)); smil00660 (C5-Branched dibasic acid metabolism - Salvia miltiorrhiza (redroot sage)); smil00770 (Pantothenate and CoA biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01210 (2-Oxocarboxylic acid metabolism - Salvia miltiorrhiza (redroot sage)); smil01230 (Biosynthesis of amino acids - Salvia miltiorrhiza (redroot sage))
Pfam	PF01842 (ACT); PF10369 (ALS_ss_C); PF13710 (ACT_5); PF22629 (ACT_AHAS_ss)
InterPro	-
eggNOG	-
NR	GeneID:130999736

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057781339.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057781339.1`
3	Nucleus	细胞核	0.00000	`XP_057781339.1`
4	Chromosome	染色体	0.00000	`XP_057781339.1`
5	Centromere	着丝粒	0.00000	`XP_057781339.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:717537`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C76
`Chr8:717563`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B104,B20,C13
`Chr8:717572`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A21,B98,D2,D7
`Chr8:718601`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C57
`Chr8:718652`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A1,A3,C84
`Chr8:719194`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B4
`Chr8:719195`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B136
`Chr8:719261`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B114,B115,B36,B5,B70
`Chr8:719454`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B130,B140,B91,C34
`Chr8:719469`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B66,C82,D11
`Chr8:720063`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A8,B66,B83,C82,D11
`Chr8:720142`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C51

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781339.1

482 aa

241

482

ACT

ACT_AHAS_ss

ACT_5

ALS_ss_C

ACT

ACT_AHAS_ss

ACT_5

ALS_ss_C

PF01842 ACT 81-144 aa PF22629 ACT_AHAS_ss 84-148 aa PF13710 ACT_5 91-149 aa PF10369 ALS_ss_C 160-233 aa PF01842 ACT 313-378 aa PF22629 ACT_AHAS_ss 315-380 aa PF13710 ACT_5 322-383 aa PF10369 ALS_ss_C 394-466 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781339.1`	Pfam	`PF01842`	ACT	Domain	81	144	9e-22	77.2	ACT domain
`XP_057781339.1`	Pfam	`PF22629`	ACT_AHAS_ss	Domain	84	148	9e-40	135.4	AHAS small subunit-like ACT domain
`XP_057781339.1`	Pfam	`PF13710`	ACT_5	Domain	91	149	2.7e-20	72.6	ACT domain
`XP_057781339.1`	Pfam	`PF10369`	ALS_ss_C	Domain	160	233	3.6e-58	194.2	Small subunit of acetolactate synthase
`XP_057781339.1`	Pfam	`PF01842`	ACT	Domain	313	378	9e-22	77.2	ACT domain
`XP_057781339.1`	Pfam	`PF22629`	ACT_AHAS_ss	Domain	315	380	9e-40	135.4	AHAS small subunit-like ACT domain
`XP_057781339.1`	Pfam	`PF13710`	ACT_5	Domain	322	383	2.7e-20	72.6	ACT domain
`XP_057781339.1`	Pfam	`PF10369`	ALS_ss_C	Domain	394	466	3.6e-58	194.2	Small subunit of acetolactate synthase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057925356.1
GGGTCCAACAACCCGAACCGTTTGGACAGACTTTTCTTCCTCACTTTTCCTTTACGAGCGAAAATCTTCACACTGTCACACACTACACCAGCAATGGCGGCTGCTGCCACTCACTCTGCGTTATTTGGCGCTTCTGCGTATCCAAATGATCTAATTCCCAGAGCTGAAATTAGCCTTCGCTCCGTCAAATTCTCTTCAAATCCGAGGAGATTTTCGGTTTGTGCTCAAAGCGCCGATGGCGATAGCAAGCGCCAAAACGA...

CDS

1 records

下载 CDS FASTA

LOC130999736
ATGGCGGCTGCTGCCACTCACTCTGCGTTATTTGGCGCTTCTGCGTATCCAAATGATCTAATTCCCAGAGCTGAAATTAGCCTTCGCTCCGTCAAATTCTCTTCAAATCCGAGGAGATTTTCGGTTTGTGCTCAAAGCGCCGATGGCGATAGCAAGCGCCAAAACGACGCCGTTATCGCTGTGTCGGATGCTCCTCTCGCCGGCAGCAGCAATTCCGCCGCCAGACAAAAGGTGAAACGTCACACAGTTTCTGTGTTTGT...

Protein

1 records

下载 Protein FASTA

XP_057781339.1
MAAAATHSALFGASAYPNDLIPRAEISLRSVKFSSNPRRFSVCAQSADGDSKRQNDAVIAVSDAPLAGSSNSAARQKVKRHTVSVFVGDESGMINRIAGVFARRGYNIESLAVGLNRDKALFTIVVSGTEKVLRQVMEQLQKLVNVLKVEDISQEPQVERELMLIKINADPEYRAEVMWLVDIFRAKIVDISDHSLTIEVTGDPGKMVAVQRNLSKFGIREIARTGKIALRREKMGESAPFWRFSAASYPDLEAKPASTV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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