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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G000127

染色体: Chr08 坐标: 793948-796125 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G000127
名称SmilChr08G000127
描述putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向793948 - 796125 / +

ID 对照

NCBI Gene IDLOC130999751
GeneID130999751
locus_tag-
NCBI NameLOC130999751
原始查询SmilChr08G000127

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial
产物putative pentatricopeptide repeat-containing protein At1g12700%2C mitochondrial
ArabidopsisAT1G12300 (AT1G12300)
Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837784]
identity=37; qcov=0.98; evalue=2.53e-128; confidence=medium
RiceOs10g0495200 (Rf4)
-
identity=33.3; qcov=0.87; evalue=4.32e-95; confidence=low
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:130999751

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 0.80000 XP_057781351.1
2 Chloroplast 叶绿体 0.20000 XP_057781351.1
3 Nucleus 细胞核 0.00000 XP_057781351.1
4 Chromosome 染色体 0.00000 XP_057781351.1
5 Centromere 着丝粒 0.00000 XP_057781351.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:794145 C T EMS_canonical_SNV CDS_variant 4 C12,C39,C70,C81
Chr8:794149 C T EMS_canonical_SNV CDS_variant 3 B109,B98,D7
Chr8:794264 G A EMS_canonical_SNV CDS_variant 3 A16,B37,B63
Chr8:794296 G A EMS_canonical_SNV CDS_variant 5 B112,B92,B97,C28,C9
Chr8:794304 C T EMS_canonical_SNV CDS_variant 2 A1,C84
Chr8:794444 G A EMS_canonical_SNV CDS_variant 1 D6
Chr8:794485 C T EMS_canonical_SNV CDS_variant 2 A25,B129
Chr8:794486 G A EMS_canonical_SNV CDS_variant 3 B108,B12,B120
Chr8:794594 G A EMS_canonical_SNV CDS_variant 1 A7
Chr8:794660 G A EMS_canonical_SNV CDS_variant 4 B111,B32,B73,C44
Chr8:794663 C T EMS_canonical_SNV CDS_variant 2 B70,D3
Chr8:794698 C T EMS_canonical_SNV CDS_variant 4 B111,B32,B73,C44

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781351.1
601 aa
N
1
300
601
PPR_3
PPR_3
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR
TPR_24
PPR_3
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_long
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR_3
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
TPR_24
PPR_1
PPR_2
PPR
PPR
C
PF13812 PPR_3 55-88 aa PF13812 PPR_3 64-122 aa PF13041 PPR_2 75-123 aa PF01535 PPR 79-108 aa PF12854 PPR_1 141-171 aa PF13041 PPR_2 145-195 aa PF01535 PPR 149-176 aa PF01535 PPR 188-212 aa PF23276 TPR_24 202-308 aa PF13812 PPR_3 205-261 aa PF13041 PPR_2 216-265 aa PF01535 PPR 220-249 aa PF12854 PPR_1 247-280 aa PF13041 PPR_2 251-300 aa PF01535 PPR 254-284 aa PF13812 PPR_3 275-332 aa PF17177 PPR_long 276-375 aa PF12854 PPR_1 283-315 aa PF13041 PPR_2 287-334 aa PF01535 PPR 289-319 aa PF12854 PPR_1 317-350 aa PF13041 PPR_2 321-370 aa PF13812 PPR_3 323-368 aa PF01535 PPR 324-354 aa PF13812 PPR_3 345-400 aa PF12854 PPR_1 352-377 aa PF13041 PPR_2 356-396 aa PF01535 PPR 359-387 aa PF13812 PPR_3 384-436 aa PF12854 PPR_1 387-420 aa PF13041 PPR_2 392-440 aa PF01535 PPR 395-423 aa PF13812 PPR_3 414-471 aa PF12854 PPR_1 424-452 aa PF13041 PPR_2 428-475 aa PF01535 PPR 429-459 aa PF13812 PPR_3 451-508 aa PF12854 PPR_1 457-488 aa PF13041 PPR_2 461-499 aa PF01535 PPR 464-494 aa PF23276 TPR_24 469-577 aa PF12854 PPR_1 492-525 aa PF13041 PPR_2 496-543 aa PF01535 PPR 500-529 aa PF01535 PPR 534-562 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057781351.1 Pfam PF13812 PPR_3 Repeat 55 88 3.6e-69 229.5 Pentatricopeptide repeat domain
XP_057781351.1 Pfam PF13812 PPR_3 Repeat 64 122 3.6e-69 229.5 Pentatricopeptide repeat domain
XP_057781351.1 Pfam PF13041 PPR_2 Repeat 75 123 3e-153 498.6 PPR repeat family
XP_057781351.1 Pfam PF01535 PPR Repeat 79 108 3.2e-91 294.1 PPR repeat
XP_057781351.1 Pfam PF12854 PPR_1 Repeat 141 171 3.6e-121 395.3 PPR repeat
XP_057781351.1 Pfam PF13041 PPR_2 Repeat 145 195 3e-153 498.6 PPR repeat family
XP_057781351.1 Pfam PF01535 PPR Repeat 149 176 3.2e-91 294.1 PPR repeat
XP_057781351.1 Pfam PF01535 PPR Repeat 188 212 3.2e-91 294.1 PPR repeat
XP_057781351.1 Pfam PF23276 TPR_24 Repeat 202 308 1.7e-37 129.0 Pentatricopeptide repeat-containing protein
XP_057781351.1 Pfam PF13812 PPR_3 Repeat 205 261 3.6e-69 229.5 Pentatricopeptide repeat domain
XP_057781351.1 Pfam PF13041 PPR_2 Repeat 216 265 3e-153 498.6 PPR repeat family
XP_057781351.1 Pfam PF01535 PPR Repeat 220 249 3.2e-91 294.1 PPR repeat
XP_057781351.1 Pfam PF12854 PPR_1 Repeat 247 280 3.6e-121 395.3 PPR repeat
XP_057781351.1 Pfam PF13041 PPR_2 Repeat 251 300 3e-153 498.6 PPR repeat family
XP_057781351.1 Pfam PF01535 PPR Repeat 254 284 3.2e-91 294.1 PPR repeat
XP_057781351.1 Pfam PF13812 PPR_3 Repeat 275 332 3.6e-69 229.5 Pentatricopeptide repeat domain
XP_057781351.1 Pfam PF17177 PPR_long Repeat 276 375 3.5e-32 112.2 Pentacotripeptide-repeat region of PRORP
XP_057781351.1 Pfam PF12854 PPR_1 Repeat 283 315 3.6e-121 395.3 PPR repeat
XP_057781351.1 Pfam PF13041 PPR_2 Repeat 287 334 3e-153 498.6 PPR repeat family
XP_057781351.1 Pfam PF01535 PPR Repeat 289 319 3.2e-91 294.1 PPR repeat
XP_057781351.1 Pfam PF12854 PPR_1 Repeat 317 350 3.6e-121 395.3 PPR repeat
XP_057781351.1 Pfam PF13041 PPR_2 Repeat 321 370 3e-153 498.6 PPR repeat family
XP_057781351.1 Pfam PF13812 PPR_3 Repeat 323 368 3.6e-69 229.5 Pentatricopeptide repeat domain
XP_057781351.1 Pfam PF01535 PPR Repeat 324 354 3.2e-91 294.1 PPR repeat
XP_057781351.1 Pfam PF13812 PPR_3 Repeat 345 400 3.6e-69 229.5 Pentatricopeptide repeat domain
XP_057781351.1 Pfam PF12854 PPR_1 Repeat 352 377 3.6e-121 395.3 PPR repeat
XP_057781351.1 Pfam PF13041 PPR_2 Repeat 356 396 3e-153 498.6 PPR repeat family
XP_057781351.1 Pfam PF01535 PPR Repeat 359 387 3.2e-91 294.1 PPR repeat
XP_057781351.1 Pfam PF13812 PPR_3 Repeat 384 436 3.6e-69 229.5 Pentatricopeptide repeat domain
XP_057781351.1 Pfam PF12854 PPR_1 Repeat 387 420 3.6e-121 395.3 PPR repeat
XP_057781351.1 Pfam PF13041 PPR_2 Repeat 392 440 3e-153 498.6 PPR repeat family
XP_057781351.1 Pfam PF01535 PPR Repeat 395 423 3.2e-91 294.1 PPR repeat
XP_057781351.1 Pfam PF13812 PPR_3 Repeat 414 471 3.6e-69 229.5 Pentatricopeptide repeat domain
XP_057781351.1 Pfam PF12854 PPR_1 Repeat 424 452 3.6e-121 395.3 PPR repeat
XP_057781351.1 Pfam PF13041 PPR_2 Repeat 428 475 3e-153 498.6 PPR repeat family
XP_057781351.1 Pfam PF01535 PPR Repeat 429 459 3.2e-91 294.1 PPR repeat
XP_057781351.1 Pfam PF13812 PPR_3 Repeat 451 508 3.6e-69 229.5 Pentatricopeptide repeat domain
XP_057781351.1 Pfam PF12854 PPR_1 Repeat 457 488 3.6e-121 395.3 PPR repeat
XP_057781351.1 Pfam PF13041 PPR_2 Repeat 461 499 3e-153 498.6 PPR repeat family
XP_057781351.1 Pfam PF01535 PPR Repeat 464 494 3.2e-91 294.1 PPR repeat
XP_057781351.1 Pfam PF23276 TPR_24 Repeat 469 577 1.7e-37 129.0 Pentatricopeptide repeat-containing protein
XP_057781351.1 Pfam PF12854 PPR_1 Repeat 492 525 3.6e-121 395.3 PPR repeat
XP_057781351.1 Pfam PF13041 PPR_2 Repeat 496 543 3e-153 498.6 PPR repeat family
XP_057781351.1 Pfam PF01535 PPR Repeat 500 529 3.2e-91 294.1 PPR repeat
XP_057781351.1 Pfam PF01535 PPR Repeat 534 562 3.2e-91 294.1 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057925368.1
TTCAACCCTTTTTTCAGATTCAATCACAACTCCTAATCTCGCAAGCGTCGCCCAACACTCTCCCTTTCTTCACATTAAATCTCACCGCCGATTAAGGATGACGAGCAGAAGAGCTGCTGTTTTTGCAATCGATCTCATTCATAATGGAAGAGGATTTCTCAATCAATGGTCGCATAAATCGGGTATTATGTCTCCTCCATTCTCTCTCTTCTCTTCCAAGGCTTTTCAACCTAAGCAGCCCAGAATCGATTTCAGCTGTG...

CDS

1 records

下载 CDS FASTA
LOC130999751
ATGACGAGCAGAAGAGCTGCTGTTTTTGCAATCGATCTCATTCATAATGGAAGAGGATTTCTCAATCAATGGTCGCATAAATCGGGTATTATGTCTCCTCCATTCTCTCTCTTCTCTTCCAAGGCTTTTCAACCTAAGCAGCCCAGAATCGATTTCAGCTGTGTTAAAGAATTAAATGATGCTATTGGAGTGTTTCAAAAAATGAACAGTATGCAGCTGGAGCCTTCTGTTCTAATGTACAACAATCTTTTGAGTGTCAC...

Protein

1 records

下载 Protein FASTA
XP_057781351.1
MTSRRAAVFAIDLIHNGRGFLNQWSHKSGIMSPPFSLFSSKAFQPKQPRIDFSCVKELNDAIGVFQKMNSMQLEPSVLMYNNLLSVTVKIEQYSFALYMFDEMLSMGVPVNVYTMNIAVNCCCLLKDIKSGFAVMGIFFKRGYEPDVATFNTLIKGLFLNHKVAEAGKLFNMLLRFKICEPNDVMIVTMVDGLCKSGNVLPARDLVRRLERSRLRPNVKAYSALLDGLRKSGMVDDALQLLSAMIEKGITPNVVTYNSMI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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